Annotation Detail for H2AFV
Basic Information Top
Gene Symbol: | H2AFV ( FLJ26479,H2AV,MGC10170,MGC10831,MGC1947 ) |
---|---|
Gene Full Name: | H2A histone family, member V |
Band: | 7p13 |
Quick Links | Entrez ID:94239; OMIM: NA; Uniprot ID:H2AV_HUMAN; ENSEMBL ID: ENSG00000105968; HGNC ID: 20664 |
Relate to Another Database: | SFARIGene; denovo-db |
Location(AA) | Modification | |
---|---|---|
5 | N6-acetyllysine. | |
8 | N6-acetyllysine. | |
12 | N6-acetyllysine. | |
14 | N6-acetyllysine. |
Location(AA) | Modifications | Resource |
---|---|---|
5 | N6-acetyllysine. | Swiss-Prot 53.0 |
8 | N6-acetyllysine. | Swiss-Prot 53.0 |
12 | N6-acetyllysine. | Swiss-Prot 53.0 |
14 | N6-acetyllysine. | Swiss-Prot 53.0 |
122 | Glycyl lysine isopeptide (Lys-Gly)(interchain with G-Cter in ubiquitin) (Bysimilarity). | Swiss-Prot 53.0 |
Location(AA) | Modification | Resource |
---|---|---|
21 | Phosphoserine(ATM) | HMM predict |
42 | Phosphothreonine(PKA) | HMM predict |
83 | Phosphothreonine(PKA) | HMM predict |
83 | Phosphothreonine(MAPK) | HMM predict |
- RefSeq ID: NM_012412
- Location:chr7 44839998-44854233
- strand:-
Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
---|---|---|---|---|---|---|
CTCF | CD4 | GSE12889 | 44863087 | 44863370 | 283 | 8995 |
CTCF | CD4 | SISSRdata | 44863087 | 44863370 | 283 | 8995 |
CTCF | Jurkat | GSE12889 | 44863154 | 44863400 | 246 | 9044 |
CTCF | G2 | GSE9613 | 44854615 | 44854771 | 156 | 460 |
E2F4 | G0 | GSE7516 | 44854239 | 44854771 | 532 | 272 |
ER | E2-MCF7 | GSE14664 | 44854320 | 44854363 | 43 | 108 |
ER | E2-MCF7 | GSE14664 | 44860646 | 44860678 | 32 | 6429 |
Fos | K562 | GSE19551 | 44863117 | 44863567 | 450 | 9109 |
LIN9 | G0 | GSE7516 | 44854212 | 44854771 | 559 | 258 |
LIN9 | S | GSE7516 | 44854212 | 44854771 | 559 | 258 |
Nanog | ES | GSE20650 | 44863087 | 44863416 | 329 | 9018 |
Oct1 | H2O2-Hela | GSE14283 | 44867056 | 44867083 | 27 | 12836 |
P300 | T30-glioblastoma | GSE21026 | 44853239 | 44855314 | 2075 | 43 |
PHF8 | 293T | GSE20725 | 44853544 | 44855189 | 1645 | 133 |
PHF8 | HeLa | GSE20725 | 44854557 | 44854941 | 384 | 516 |
RNAII | Tamoxifen-MCF7 | GSE14664 | 44861440 | 44861530 | 90 | 7252 |
Rb | Growing | GSE19898 | 44854338 | 44854818 | 480 | 345 |
Rb | Quiescent | GSE19898 | 44854177 | 44855080 | 903 | 395 |
Rb | Senescent | GSE19898 | 44854122 | 44854935 | 813 | 295 |
Rb | shRbQuiescent | GSE19898 | 44854275 | 44854783 | 508 | 296 |
Rb | shRbSenescence | GSE19898 | 44854334 | 44854963 | 629 | 415 |
Rb | shRbSenescence | GSE19898 | 44863090 | 44863343 | 253 | 8983 |
p130 | Quiescent | GSE19898 | 44854211 | 44854818 | 607 | 281 |
p130 | Senescent | GSE19898 | 44854199 | 44855000 | 801 | 366 |
p130 | shRbQuiescent | GSE19898 | 44854224 | 44854961 | 737 | 359 |
p130 | shRbSenescent | GSE19898 | 44854117 | 44854989 | 872 | 320 |
p130 | G0 | GSE7516 | 44854212 | 44854771 | 559 | 258 |
No data |
Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
---|---|---|---|---|---|---|
CTCF | G2 | GSE9613 | 44853506 | 44854378 | 872 | 0 |
ER | E2-MCF7 | GSE14664 | 44851523 | 44851583 | 60 | 0 |
ER | E2-MCF7 | GSE14664 | 44852092 | 44852167 | 75 | 0 |
FOXA1 | MCF7 | GSE15244 | 44853506 | 44854771 | 1265 | 0 |
H3K4me3 | colorectal | cancer | 44853211 | 44853916 | 705 | 0 |
H3ac | HepG2 | E | 44852849 | 44853888 | 1039 | 0 |
PHF8 | HeLa | GSE20725 | 44853495 | 44854533 | 1038 | 0 |
Rb | Quiescent | GSE19898 | 44853713 | 44853935 | 222 | 0 |
Rb | Senescent | GSE19898 | 44853597 | 44854002 | 405 | 0 |
TAF | Hela | GSE8489 | 44851819 | 44852422 | 603 | 0 |
TAF | Hela | GSE8489 | 44852849 | 44853852 | 1003 | 0 |
TAF | k562 | GSE8489 | 44852849 | 44853916 | 1067 | 0 |
hScc1 | Bcell | GSE12603 | 44853470 | 44854336 | 866 | 0 |
hScc1 | CdLS | GSE12603 | 44853435 | 44854378 | 943 | 0 |
hScc1 | G2 | GSE9613 | 44853358 | 44853916 | 558 | 0 |
p130 | shRbQuiescent | GSE19898 | 44853503 | 44853855 | 352 | 0 |
Cluster ID | Plue Type | Plus Gene Name | Plus Chromosome | Plus Start | Plus End | Overlap Length | Minus Type | Minus Gene Name | Minus Chromosome | Minus Star | Minus End | Type |
---|---|---|---|---|---|---|---|---|---|---|---|---|
23943 | EST | chr7 | 44644816 | 44645412 | 460 | mRNA | H2AFV | chr7 | 44644816 | 44647011 | Sense/Antisense (SA) pairs | |