Annotation Detail for APOBEC3B
Basic Information Top
| Gene Symbol: | APOBEC3B ( APOBEC1L,ARCD3,ARP4,DJ742C19.2,FLJ21201,PHRBNL,bK150C2.2 ) |
|---|---|
| Gene Full Name: | apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B |
| Band: | 22q13.1 |
| Quick Links | Entrez ID:9582; OMIM: 607110; Uniprot ID:ABC3B_HUMAN; ENSEMBL ID: ENSG00000179750; HGNC ID: 17352 |
| Relate to Another Database: | SFARIGene; denovo-db |
| No data |
| No data |
| Location(AA) | Modification | Resource |
|---|---|---|
| 13 | Phosphotyrosine(EGFR) | HMM predict |
| 18 | Sulfotyrosine | HMM predict |
| 18 | Phosphotyrosine(Syk) | HMM predict |
| 18 | Phosphotyrosine(EGFR) | HMM predict |
| 97 | S-palmitoyl | HMM predict |
| 113 | N-linked | HMM predict |
| 117 | O-linked | HMM predict |
| 125 | Sulfotyrosine | HMM predict |
| 146 | Phosphothreonine(PKC) | HMM predict |
| 214 | Phosphothreonine(PKC) | HMM predict |
| 214 | Phosphothreonine(PKA) | HMM predict |
| 225 | N-linked | HMM predict |
| 315 | Sulfotyrosine | HMM predict |
| 366 | Phosphoserine(ATM) | HMM predict |
| 373 | Leucine | HMM predict |
- RefSeq ID: NM_004900
- Location:chr22 37708350-37718728
- strand:+
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | CD4 | GSE12889 | 37699599 | 37699865 | 266 | 8619 |
| CTCF | CD4 | SISSRdata | 37699599 | 37699865 | 266 | 8619 |
| CTCF | Hela | GSE12889 | 37699435 | 37699821 | 386 | 8723 |
| CTCF | Jurkat | GSE12889 | 37699610 | 37699911 | 301 | 8590 |
| CTCF | Jurkat | GSE12889 | 37707339 | 37707507 | 168 | 928 |
| CTCF | G2 | GSE9613 | 37699304 | 37699899 | 595 | 8749 |
| Fos | K562 | GSE19551 | 37707956 | 37708519 | 563 | 113 |
| LIN9 | S | GSE7516 | 37707218 | 37708962 | 1744 | 261 |
| Myc | K562 | GSE19551 | 37699492 | 37699867 | 375 | 8671 |
| P300 | T0-glioblastoma | GSE21026 | 37708124 | 37708562 | 438 | 8 |
| hScc1 | Bcell | GSE12603 | 37699508 | 37699899 | 391 | 8647 |
| hScc1 | CdLS | GSE12603 | 37699269 | 37699899 | 630 | 8767 |
| p130 | Senescent | GSE19898 | 37707335 | 37707555 | 220 | 906 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | CD4 | GSE12889 | 37729176 | 37729323 | 147 | 10521 |
| CTCF | CD4 | SISSRdata | 37729176 | 37729323 | 147 | 10521 |
| CTCF | Hela | GSE12889 | 37729065 | 37729349 | 284 | 10479 |
| Myc | K562 | GSE19551 | 37729156 | 37729482 | 326 | 10591 |
| P300 | T30-glioblastoma | GSE21026 | 37728799 | 37729683 | 884 | 10513 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| E2F4 | G0 | GSE7516 | 37707945 | 37708962 | 1017 | 0 |
| H3ac | HepG2 | E | 37708212 | 37708593 | 381 | 0 |
| LIN54 | G0 | GSE7516 | 37708132 | 37708731 | 599 | 0 |
| LIN9 | G0 | GSE7516 | 37707924 | 37708962 | 1038 | 0 |
| NFkBII | GM12878 | GSE19485 | 37710169 | 37711661 | 1492 | 0 |
| NFkBII | GM12892 | GSE19485 | 37710014 | 37711661 | 1647 | 0 |
| NFkBII | GM15510 | GSE19485 | 37710609 | 37711571 | 962 | 0 |
| NFkBII | GM18526 | GSE19485 | 37710701 | 37711573 | 872 | 0 |
| Rb | Growing | GSE19898 | 37708174 | 37708529 | 355 | 0 |
| Rb | Quiescent | GSE19898 | 37708287 | 37708522 | 235 | 0 |
| hScc1 | Bcell | GSE12603 | 37708241 | 37708767 | 526 | 0 |
| p130 | Quiescent | GSE19898 | 37708172 | 37708722 | 550 | 0 |
| p130 | Senescent | GSE19898 | 37708170 | 37708954 | 784 | 0 |
| p130 | shRbQuiescent | GSE19898 | 37708024 | 37708709 | 685 | 0 |
| p130 | shRbSenescent | GSE19898 | 37708017 | 37709066 | 1049 | 0 |
| p130 | G0 | GSE7516 | 37707924 | 37708962 | 1038 | 0 |
| p130 | S | GSE7516 | 37707945 | 37708962 | 1017 | 0 |
Validated miRNA targets