AutismKB 2.0

Annotation Detail for RBM39


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Basic Information Top
Gene Symbol:RBM39 ( CAPER,CAPERalpha,CC1.3,DKFZp781C0423,FLJ44170,HCC1,RNPC2,fSAP59 )
Gene Full Name: RNA binding motif protein 39
Band: 20q11.22
Quick LinksEntrez ID:9584; OMIM: 604739; Uniprot ID:RBM39_HUMAN; ENSEMBL ID: ENSG00000131051; HGNC ID: 15923
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
2N-acetylalanine.
95Phosphotyrosine.
97Phosphoserine.
100Phosphoserine.
117Phosphoserine.
127Phosphoserine.
129Phosphoserine.
136Phosphoserine.
146Phosphothreonine.
334Phosphoserine.
337Phosphoserine.
341Phosphoserine.
Location(AA) Modifications Resource
97Phosphoserine.Swiss-Prot 53.0
97PhosphoserinePhospho.ELM 6.0
127Phosphoserine.Swiss-Prot 53.0
127PhosphoserinePhospho.ELM 6.0
129Phosphoserine.Swiss-Prot 53.0
129PhosphoserinePhospho.ELM 6.0
136Phosphoserine.Swiss-Prot 53.0
136PhosphoserinePhospho.ELM 6.0
337Phosphoserine (By similarity).Swiss-Prot 53.0
Location(AA) Modification Resource
32Phosphoserine(CK1)HMM predict
38Phosphoserine(PKG)HMM predict
50Phosphoserine(PKG)HMM predict
58Phosphoserine(PKG)HMM predict
66Phosphoserine(PKG)HMM predict
74Phosphoserine(PKG)HMM predict
76Phosphoserine(CK1)HMM predict
82Phosphoserine(CK1)HMM predict
82PhosphoserineHMM predict
82Phosphoserine(PKG)HMM predict
99Phosphotyrosine(Syk)HMM predict
125Phosphoserine(PKG)HMM predict
127Phosphoserine(PKG)HMM predict
129Phosphoserine(CDC2)HMM predict
136Phosphoserine(CDC2)HMM predict
136Phosphoserine(CDK)HMM predict
136PhosphoserineHMM predict
144N-linkedHMM predict
260N-linkedHMM predict
301Phosphoserine(CK2)HMM predict
337Phosphoserine(IKK)HMM predict
337Phosphoserine(CK2)HMM predict
404Phosphoserine(PKG)HMM predict
475Phosphotyrosine(Jak)HMM predict
505Phosphotyrosine(Jak)HMM predict
513AsparagineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_004902
  • Location:chr20 33754944-33793606
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Fos K562GSE19551 33793357 33794184 827 164
H3ac HepG2E 33792686 33795115 2429 294
H3ac HepG2E 33795450 33795760 310 1999
PHF8 Hs68minusFBSGSE20725 33792960 33794433 1473 90
TAF HelaGSE8489 33792686 33794783 2097 128
TAF HelaGSE8489 33795450 33795760 310 1999
TAF k562GSE8489 33792686 33795057 2371 265
USF1 HepG2E 33793572 33794818 1246 589
USF2 HepG2E 33792686 33795095 2409 284
p63 keratinocytesGSE17611 33797995 33798770 775 4776
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 33793090 33793976 886 0
ETS1 JurkatGSE17954 33792559 33794479 1920 0
H3K4me3 colorectalcancer 33791852 33792335 483 0
H3K4me3 colorectalcancer 33793003 33793532 529 0
H3ac HepG2E 33789624 33790333 709 0
H3ac HepG2E 33790753 33792335 1582 0
PHF8 293TGSE20725 33792633 33794456 1823 0
PHF8 HeLaGSE20725 33792871 33794275 1404 0
PHF8 Hs68plusFBSGSE20725 33792532 33794569 2037 0
TAF HelaGSE8489 33791659 33792335 676 0
VDR GM10861-UnstimGSE22484 33789290 33796004 6714 0
VDR GM10861-stimGSE22484 33789244 33795923 6679 0
hScc1 BcellGSE12603 33792708 33793868 1160 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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