Annotation Detail for CD47

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Basic Information Top

Gene Symbol:	CD47 ( IAP,MER6,OA3 )
Gene Full Name:	CD47 molecule
Band:	3q13.12
Quick Links	Entrez ID:961; OMIM: 601028; Uniprot ID:CD47_HUMAN; ENSEMBL ID: ENSG00000196776; HGNC ID: 1682
Relate to Another Database:	SFARIGene; denovo-db

Post Translation Modification

Location(AA)	Modification
19	Pyrrolidone carboxylic acid.
23	N-linked (GlcNAc...).
34	N-linked (GlcNAc...).
50	N-linked (GlcNAc...).
73	N-linked (GlcNAc...).
111	N-linked (GlcNAc...).
206	N-linked (GlcNAc...) (Potential).

Location(AA)	Modifications	Resource
19	Pyrrolidone carboxylic acid (Probable).	Swiss-Prot 53.0
23	N-linked (GlcNAc...) (Potential).	Swiss-Prot 53.0
34	N-linked (GlcNAc...).	Swiss-Prot 53.0
50	N-linked (GlcNAc...) (Potential).	Swiss-Prot 53.0
73	N-linked (GlcNAc...).	Swiss-Prot 53.0
111	N-linked (GlcNAc...).	Swiss-Prot 53.0
206	N-linked (GlcNAc...) (Potential).	Swiss-Prot 53.0

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
FOXA1	MCF7	GSE15244	109293247	109293688	441	843
PHF8	HeLa	GSE20725	109292104	109293368	1264	112
RARG	MCF7	GSE15244	109308879	109309018	139	16324
hScc1	Bcell	GSE12603	109293096	109293688	592	768

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
FOXA1	MCF7	GSE15244	109233526	109233779	253	10978
FoxA1	MCF7	MACSdata	109233519	109233693	174	11025
Oct1	Hela	GSE14283	109237744	109237823	79	6847

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length
CTCF	G2	GSE9613	109291984	109292810	826
FOXA1	MCF7	GSE15244	109254550	109255182	632
H3K4me3	colorectal	cancer	109290883	109292124	1241
H3ac	HepG2	E	109291178	109291984	806
Myc	hES	GSE17917	109260053	109260381	328
Oct1	Hela	GSE14283	109245678	109245716	38
Oct1	Hela	GSE14283	109278412	109278445	33
Oct1	Hela	GSE14283	109278528	109278566	38
PHF8	293T	GSE20725	109291856	109293250	1394
PHF8	Hs68plusFBS	GSE20725	109291711	109293326	1615
RARA	MCF7	GSE15244	109254550	109255182	632
hScc1	Bcell	GSE12603	109291911	109292698	787
hScc1	G2	GSE9613	109291756	109293282	1526

Validated miRNA targets

Micro RNA Name	Stem Loop Name	The chromosome that miRNA located	Publication
hsa-miR-155	hsa-mir-155	21	19952055
hsa-miR-155	hsa-mir-155	21	19952055
hsa-miR-155*	hsa-mir-155	21	19952055
hsa-miR-155*	hsa-mir-155	21	19952055
hsa-miR-17	hsa-mir-17	13	19952055
hsa-miR-17	hsa-mir-17	13	19952055
hsa-miR-17*	hsa-mir-17	13	19952055
hsa-miR-17*	hsa-mir-17	13	19952055
hsa-miR-326	hsa-mir-326	11	21151203
hsa-miR-326	hsa-mir-326	11	19952055
hsa-miR-326	hsa-mir-326	11	21151203
hsa-miR-326	hsa-mir-326	11	19952055
hsa-miR-34a	hsa-mir-34a	1	19952055
hsa-miR-34a	hsa-mir-34a	1	19952055
hsa-miR-34a*	hsa-mir-34a	1	19952055
hsa-miR-34a*	hsa-mir-34a	1	19952055
hsa-miR-92a	hsa-mir-92a-1	13	19952055
hsa-miR-92a	hsa-mir-92a-2	X	19952055
hsa-miR-92a	hsa-mir-92a-1	13	19952055
hsa-miR-92a	hsa-mir-92a-2	X	19952055

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
18449	EST		chr3	109245398	109245967	569	mRNA	CD47	chr3	109244836	109292592	Sense/Antisense (SA) pairs

Simple Query:

Paper Collected: 6/30/2018

Last Update: 8/26/2018