AutismKB 2.0

Annotation Detail for SNCAIP


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Basic Information Top
Gene Symbol:SNCAIP ( MGC39814,SYPH1,Sph1 )
Gene Full Name: synuclein, alpha interacting protein
Band: 5q23.2
Quick LinksEntrez ID:9627; OMIM: 603779; Uniprot ID:SNCAP_HUMAN; ENSEMBL ID: ENSG00000064692; HGNC ID: 11139
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
387Phosphothreonine.
Location(AA) Modifications Resource
Location(AA) Modification Resource
6Phosphotyrosine(Jak)HMM predict
15Phosphoserine(ATM)HMM predict
23O-linkedHMM predict
45Phosphoserine(CK1)HMM predict
45Phosphoserine(CK2)HMM predict
46Phosphoserine(CK1)HMM predict
46PhosphoserineHMM predict
80Phosphoserine(CDC2)HMM predict
94Phosphoserine(CK2)HMM predict
133O-linkedHMM predict
134Phosphoserine(IKK)HMM predict
137Phosphoserine(CK1)HMM predict
139Phosphoserine(CK1)HMM predict
146SulfotyrosineHMM predict
197O-linkedHMM predict
199O-linkedHMM predict
200Phosphoserine(CK1)HMM predict
200O-linkedHMM predict
211Phosphoserine(CDC2)HMM predict
260N-linkedHMM predict
275Phosphothreonine(PKA)HMM predict
292Phosphoserine(PKG)HMM predict
292Phosphoserine(CK2)HMM predict
302N-linkedHMM predict
306Phosphoserine(ATM)HMM predict
482N-linkedHMM predict
487N-linkedHMM predict
494Phosphoserine(ATM)HMM predict
517Phosphoserine(IKK)HMM predict
538Phosphothreonine(PKA)HMM predict
556Phosphoserine(IKK)HMM predict
559O-linkedHMM predict
559Phosphoserine(CK1)HMM predict
560Phosphoserine(ATM)HMM predict
560Phosphoserine(CDC2)HMM predict
560Phosphoserine(CDK)HMM predict
560Phosphoserine(IKK)HMM predict
562Phosphoserine(CK1)HMM predict
563Phosphoserine(CDC2)HMM predict
563Phosphoserine(IKK)HMM predict
565Phosphoserine(CK1)HMM predict
566Phosphoserine(IKK)HMM predict
566Phosphoserine(CDK)HMM predict
566Phosphoserine(CDC2)HMM predict
583Phosphoserine(IKK)HMM predict
616Phosphoserine(CK1)HMM predict
652Phosphoserine(CK1)HMM predict
676PhosphoserineHMM predict
676Phosphoserine(CK1)HMM predict
678Phosphoserine(ATM)HMM predict
680Phosphothreonine(CK2)HMM predict
682Phosphoserine(IKK)HMM predict
683N-linkedHMM predict
684N-linkedHMM predict
691PhosphothreonineHMM predict
691Phosphothreonine(CDK)HMM predict
691Phosphothreonine(MAPK)HMM predict
691Phosphothreonine(CDC2)HMM predict
710PhosphoserineHMM predict
713PhosphoserineHMM predict
747Phosphoserine(IKK)HMM predict
749Phosphoserine(MAPK)HMM predict
751O-linkedHMM predict
751Phosphothreonine(PKC)HMM predict
751O-linkedHMM predict
752Phosphoserine(IKK)HMM predict
752Phosphoserine(CK2)HMM predict
754Phosphoserine(CK2)HMM predict
755Phosphoserine(CK2)HMM predict
755Phosphoserine(CK1)HMM predict
766Phosphoserine(ATM)HMM predict
768Phosphoserine(IKK)HMM predict
775O-linkedHMM predict
782Phosphoserine(IKK)HMM predict
782Phosphoserine(CDC2)HMM predict
785Phosphoserine(IKK)HMM predict
793Phosphothreonine(PKC)HMM predict
794Phosphoserine(CDC2)HMM predict
801Phosphoserine(CDK)HMM predict
801Phosphoserine(CDC2)HMM predict
801Phosphoserine(IKK)HMM predict
808Phosphothreonine(PKA)HMM predict
809Phosphoserine(PKA)HMM predict
843Phosphothreonine(CDK)HMM predict
851N-linkedHMM predict
881Phosphotyrosine(EGFR)HMM predict
918AlanineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_005460
  • Location:chr5 121675718-121827692
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 121675377 121675925 548 68
Oct1 HelaGSE14283 121658547 121658619 72 17136
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 121842406 121843127 721 15074
CTCF G2GSE9613 121831879 121832055 176 4275
FOXA1 MCF7GSE15244 121842432 121843140 708 15094
Nanog ESGSE20650 121838000 121838134 134 10375
P300 T0-glioblastomaGSE21026 121842232 121844436 2204 15642
P300 T30-glioblastomaGSE21026 121836568 121837389 821 9286
P300 T30-glioblastomaGSE21026 121842474 121843296 822 15193
RARA MCF7GSE15244 121842432 121844169 1737 15608
STAT1 HeLaGSE12783 121842349 121843257 908 15111
TFAP2C MCF7GSE21234 121842620 121843213 593 15224
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF HelaGSE12889 121779228 121779441 213 0
CTCF G2GSE9613 121814332 121814772 440 0
CTCF G2GSE9613 121821712 121822500 788 0
ER E2-MCF7GSE14664 121804171 121804210 39 0
FOXA1 MCF7GSE15244 121782403 121783216 813 0
FoxA1 MCF7MACSdata 121782700 121783179 479 0
Myc hESGSE17917 121779096 121779412 316 0
Nanog hESGSE18292 121717914 121718442 528 0
Oct1 H2O2-HelaGSE14283 121744410 121744450 40 0
Oct1 H2O2-HelaGSE14283 121756354 121756380 26 0
Oct1 H2O2-HelaGSE14283 121768733 121768762 29 0
Oct1 H2O2-HelaGSE14283 121775435 121775461 26 0
Oct1 H2O2-HelaGSE14283 121795108 121795147 39 0
Oct1 H2O2-HelaGSE14283 121821139 121821171 32 0
Oct1 H2O2-HelaGSE14283 121823698 121823727 29 0
Oct1 HelaGSE14283 121756353 121756380 27 0
Oct1 HelaGSE14283 121768589 121768621 32 0
Oct1 HelaGSE14283 121768734 121768761 27 0
Oct1 HelaGSE14283 121790579 121790611 32 0
Oct1 HelaGSE14283 121795100 121795147 47 0
Oct1 HelaGSE14283 121804465 121804500 35 0
Oct1 HelaGSE14283 121823694 121823734 40 0
Oct4 hESGSE17917 121779190 121779479 289 0
Sox2 hESGSE18292 121717908 121718441 533 0
Sox2 hESGSE18292 121793001 121793863 862 0
TFAP2C MCF7GSE21234 121819582 121819934 352 0
hScc1 BcellGSE12603 121771802 121772066 264 0
hScc1 BcellGSE12603 121778900 121779594 694 0
hScc1 BcellGSE12603 121821712 121822427 715 0
hScc1 CdLSGSE12603 121821638 121822214 576 0
hScc1 G2GSE9613 121821784 121822500 716 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
21378 mRNA SNCAIP chr5 121675831 121827648 120 mRNA MGC32805 chr5 121800090 121842681Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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