AutismKB 2.0

Annotation Detail for SDC3


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Basic Information Top
Gene Symbol:SDC3 ( SDCN,SYND3 )
Gene Full Name: syndecan 3
Band: 1p35.2
Quick LinksEntrez ID:9672; OMIM: 186357; Uniprot ID:SDC3_HUMAN; ENSEMBL ID: ENSG00000162512; HGNC ID: 10660
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
80O-linked (Xyl...) (glycosaminoglycan)
82O-linked (Xyl...) (glycosaminoglycan)
84O-linked (Xyl...) (glycosaminoglycan)
91O-linked (Xyl...) (glycosaminoglycan)
314O-linked (Xyl...) (glycosaminoglycan)
367O-linked (Xyl...) (glycosaminoglycan)
441Phosphotyrosine.
Location(AA) Modifications Resource
80O-linked (Xyl...) (glycosaminoglycan)(Potential).Swiss-Prot 53.0
82O-linked (Xyl...) (glycosaminoglycan)(Potential).Swiss-Prot 53.0
84O-linked (Xyl...) (glycosaminoglycan)(Potential).Swiss-Prot 53.0
91O-linked (Xyl...) (glycosaminoglycan)(Potential).Swiss-Prot 53.0
314O-linked (Xyl...) (glycosaminoglycan)(Potential).Swiss-Prot 53.0
367O-linked (Xyl...) (glycosaminoglycan)(Potential).Swiss-Prot 53.0
409PhosphotyrosinePhospho.ELM 6.0
419PhosphotyrosinePhospho.ELM 6.0
431PhosphotyrosinePhospho.ELM 6.0
441PhosphotyrosinePhospho.ELM 6.0
Location(AA) Modification Resource
8MethylarginineHMM predict
64Phosphoserine(CK2)HMM predict
69Phosphoserine(CK2)HMM predict
69Phosphoserine(IKK)HMM predict
80Phosphoserine(CK1)HMM predict
86Phosphotyrosine(INSR)HMM predict
110O-linkedHMM predict
110O-linkedHMM predict
141Phosphoserine(CDK)HMM predict
141Phosphoserine(MAPK)HMM predict
141Phosphoserine(CDC2)HMM predict
160Phosphoserine(PKA)HMM predict
160O-linkedHMM predict
160O-linkedHMM predict
160O-linkedHMM predict
161O-linkedHMM predict
162O-linkedHMM predict
165O-linkedHMM predict
169O-linkedHMM predict
170O-linkedHMM predict
170O-linkedHMM predict
171O-linkedHMM predict
175O-linkedHMM predict
182O-linkedHMM predict
185O-linkedHMM predict
187Phosphothreonine(MAPK)HMM predict
189O-linkedHMM predict
189O-linkedHMM predict
190O-linkedHMM predict
199O-linkedHMM predict
221O-linkedHMM predict
225O-linkedHMM predict
226PhosphothreonineHMM predict
231Phosphoserine(IKK)HMM predict
231O-linkedHMM predict
231Phosphoserine(CDC2)HMM predict
231O-linkedHMM predict
235O-linkedHMM predict
241O-linkedHMM predict
245Phosphothreonine(MAPK)HMM predict
250O-linkedHMM predict
250Phosphoserine(IKK)HMM predict
250O-linkedHMM predict
265O-linkedHMM predict
265O-linkedHMM predict
275Phosphothreonine(PKA)HMM predict
280O-linkedHMM predict
280O-linkedHMM predict
286O-linkedHMM predict
291O-linkedHMM predict
291Phosphothreonine(MAPK)HMM predict
291Phosphothreonine(CDC2)HMM predict
293Phosphothreonine(MAPK)HMM predict
293O-linkedHMM predict
310O-linkedHMM predict
310O-linkedHMM predict
345Phosphoserine(CDC2)HMM predict
345Phosphoserine(IKK)HMM predict
419Phosphotyrosine(INSR)HMM predict
419SulfotyrosineHMM predict
430Phosphothreonine(PKC)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_014654
  • Location:chr1 31118568-31154066
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 31156835 31157059 224 2881
CTCF CD4SISSRdata 31156835 31157059 224 2881
CTCF G2GSE9613 31156901 31157724 823 3246
Oct1 H2O2-HelaGSE14283 31163115 31163144 29 9063
Oct1 H2O2-HelaGSE14283 31164661 31164689 28 10609
Oct1 HelaGSE14283 31164656 31164692 36 10608
Rb GrowingGSE19898 31156477 31156796 319 2570
Rb GrowingGSE19898 31156809 31157003 194 2840
Rb shRbSenescenceGSE19898 31156892 31157107 215 2933
hScc1 BcellGSE12603 31156901 31157446 545 3107
hScc1 CdLSGSE12603 31156901 31157419 518 3094
hScc1 G2GSE9613 31156901 31157695 794 3232
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 31103535 31103744 209 14929
ETS1 JurkatGSE17954 31099474 31100002 528 18831
Fos K562GSE19551 31099344 31100056 712 18869
Myc K562GSE19551 31099522 31099985 463 18815
Myc K562GSE19551 31117237 31118214 977 843
NRSF JurkatGSE13047 31103993 31104777 784 14184
NRSF mAbJurkat 31101704 31101968 264 16733
NRSF mAbJurkat 31103239 31104727 1488 14586
NRSF mAbJurkat 31105163 31105975 812 13000
NRSF-mono JurkatQuESTdata 31103998 31104770 772 14185
NRSF-poly JurkatQuESTdata 31104034 31104777 743 14163
Oct1 H2O2-HelaGSE14283 31109956 31110001 45 8590
Oct1 HelaGSE14283 31109956 31109995 39 8593
USF1 HepG2E 31097899 31099405 1506 19917
USF1 HepG2E 31100282 31100973 691 17941
USF1 HepG2E 31104304 31104727 423 14053
USF2 HepG2E 31098933 31099405 472 19400
hScc1 BcellGSE12603 31101649 31101968 319 16760
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 31123885 31124202 317 0
CTCF G2GSE9613 31127463 31128230 767 0
CTCF G2GSE9613 31129415 31129918 503 0
CTCF G2GSE9613 31130995 31131435 440 0
CTCF G2GSE9613 31132200 31132912 712 0
CTCF G2GSE9613 31133502 31134066 564 0
CTCF G2GSE9613 31138365 31138747 382 0
ER Breast-CancerGSE22609 31137934 31138671 737 0
ER MCF7GSE19013 31151235 31151847 612 0
GABP GMOGSE8489 31140189 31140480 291 0
GABP HepG2GSE8489 31140189 31140480 291 0
Myc K562GSE19551 31141090 31142121 1031 0
PAX3-FKHR Rh4GSE19063 31124157 31125497 1340 0
SRF GMOGSE8489 31140189 31140501 312 0
SRF HepG2GSE8489 31140189 31140501 312 0
TFAP2C MCF7GSE21234 31122902 31123287 385 0
TFAP2C MCF7GSE21234 31125242 31125698 456 0
hScc1 BcellGSE12603 31123810 31124173 363 0
hScc1 BcellGSE12603 31131260 31131752 492 0
hScc1 BcellGSE12603 31132200 31132663 463 0
hScc1 BcellGSE12603 31148075 31148767 692 0
hScc1 BcellGSE12603 31152808 31153655 847 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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