AutismKB 2.0

Annotation Detail for KDM4A


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Basic Information Top
Gene Symbol:KDM4A ( JHDM3A,JMJD2,JMJD2A,KIAA0677 )
Gene Full Name: lysine (K)-specific demethylase 4A
Band: 1p34.2-p34.1
Quick LinksEntrez ID:9682; OMIM: 609764; Uniprot ID:KDM4A_HUMAN; ENSEMBL ID: ENSG00000066135; HGNC ID: 22978
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
547Phosphotyrosine.
Location(AA) Modifications Resource
No data
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_014663
  • Location:chr1 43888383-43943774
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ER MCF7GSE19013 43877744 43878904 1160 10060
H3ac HepG2E 43886869 43887459 590 1220
H3ac HepG2E 43887971 43888227 256 285
p130 QuiescentGSE19898 43887764 43888667 903 168
p130 SenescentGSE19898 43887884 43888549 665 167
p130 shRbSenescentGSE19898 43888051 43888641 590 38
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Rb GrowingGSE19898 43944293 43944477 184 611
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 43907749 43907882 133 0
CTCF G2GSE9613 43942985 43943254 269 0
ER E2-MCF7GSE14664 43917576 43917610 34 0
H3ac HepG2E 43889695 43890728 1033 0
H3ac HepG2E 43891321 43891964 643 0
H3ac HepG2E 43942491 43942985 494 0
Nanog ESGSE20650 43898031 43899250 1219 0
Oct4 ESGSE20650 43898634 43899153 519 0
Oct4 hESGSE17917 43898733 43899053 320 0
Oct4 hESGSE21916 43898496 43899124 628 0
PHF8 293TGSE20725 43887653 43889424 1771 0
PHF8 HeLaGSE20725 43887535 43889314 1779 0
PHF8 Hs68minusFBSGSE20725 43887525 43889396 1871 0
PHF8 Hs68plusFBSGSE20725 43887598 43889350 1752 0
Pol2 GM12878GSE19551 43887802 43889149 1347 0
PolII HeLaGSE12783 43887473 43889386 1913 0
TAF k562GSE8489 43891250 43893083 1833 0
hScc1 CdLSGSE12603 43891676 43892179 503 0
p130 shRbQuiescentGSE19898 43887705 43889301 1596 0
p63 keratinocytesGSE17611 43904508 43905563 1055 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
690 mRNA JMJD2A chr1 43784930 43840231 425 EST chr1 43838158 43839510Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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