AutismKB 2.0

Annotation Detail for HDAC9


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Basic Information Top
Gene Symbol:HDAC9 ( DKFZp779K1053,HD7,HD7b,HD9,HDAC,HDAC7,HDAC7B,HDAC9B,HDAC9FL,HDRP,KIAA0744,MITR )
Gene Full Name: histone deacetylase 9
Band: 7p21.1
Quick LinksEntrez ID:9734; OMIM: 606543; Uniprot ID:HDAC9_HUMAN; ENSEMBL ID: ENSG00000048052; HGNC ID: 14065
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
22Phosphoserine.
220Phosphoserine (By similarity).
240Phosphoserine (By similarity).
451Phosphoserine (By similarity).
Location(AA) Modifications Resource
220Phosphoserine (By similarity).Swiss-Prot 53.0
240Phosphoserine (By similarity).Swiss-Prot 53.0
451Phosphoserine (By similarity).Swiss-Prot 53.0
Location(AA) Modification Resource
22Phosphoserine(MAPK)HMM predict
74N-linkedHMM predict
132MethylarginineHMM predict
160Phosphothreonine(MAPK)HMM predict
166N-linkedHMM predict
184O-linkedHMM predict
189O-linkedHMM predict
189Phosphoserine(IKK)HMM predict
193O-linkedHMM predict
193Phosphoserine(ATM)HMM predict
220PhosphoserineHMM predict
220Phosphoserine(CAMK2)HMM predict
240Phosphoserine(CDK)HMM predict
264Phosphoserine(IKK)HMM predict
265O-linkedHMM predict
267O-linkedHMM predict
267Phosphoserine(IKK)HMM predict
269Phosphoserine(IKK)HMM predict
269Phosphoserine(CK1)HMM predict
270Phosphoserine(CDC2)HMM predict
273O-linkedHMM predict
273Phosphoserine(ATM)HMM predict
273Phosphoserine(IKK)HMM predict
276O-linkedHMM predict
277Phosphoserine(CDC2)HMM predict
289N-linkedHMM predict
292O-linkedHMM predict
297Phosphothreonine(MAPK)HMM predict
305Phosphoserine(ATM)HMM predict
324Phosphoserine(CDK)HMM predict
324Phosphoserine(CDC2)HMM predict
324PhosphoserineHMM predict
376O-linkedHMM predict
389N-linkedHMM predict
426Phosphothreonine(PKC)HMM predict
447N-linkedHMM predict
457Phosphoserine(IKK)HMM predict
523Phosphoserine(IKK)HMM predict
525N-linkedHMM predict
527O-linkedHMM predict
554PhosphoserineHMM predict
554Phosphoserine(CK2)HMM predict
554Phosphoserine(CK1)HMM predict
586Phosphoserine(PKG)HMM predict
586Phosphoserine(CAMK2)HMM predict
607O-linkedHMM predict
611Phosphoserine(IKK)HMM predict
612PhosphoserineHMM predict
612Phosphoserine(CDC2)HMM predict
616O-linkedHMM predict
650N-linkedHMM predict
686Phosphoserine(PKC)HMM predict
686Phosphoserine(PKG)HMM predict
695Phosphoserine(CK1)HMM predict
825N-linkedHMM predict
832Phosphotyrosine(Jak)HMM predict
832Phosphotyrosine(Syk)HMM predict
845Phosphotyrosine(INSR)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_014707
  • Location:chr7 18501893-18674989
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Nanog ESGSE20650 18501632 18502064 432 46
Oct4 hESGSE17917 18501566 18502158 592 32
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 18514139 18516055 1916 0
CTCF CD4GSE12889 18672347 18672612 265 0
CTCF CD4SISSRdata 18672347 18672612 265 0
CTCF G2GSE9613 18596429 18596966 537 0
CTCF G2GSE9613 18616694 18616872 178 0
CTCF G2GSE9613 18672204 18672645 441 0
ER E2-MCF7GSE14664 18519163 18519196 33 0
ER E2-MCF7GSE14664 18520835 18520893 58 0
ER E2-MCF7GSE14664 18535556 18535589 33 0
ER E2-MCF7GSE14664 18568986 18569081 95 0
ER E2-MCF7GSE14664 18630661 18630752 91 0
FoxA1 MCF7MACSdata 18672295 18672536 241 0
Oct1 H2O2-HelaGSE14283 18509589 18509617 28 0
Oct1 H2O2-HelaGSE14283 18511763 18511797 34 0
Oct1 H2O2-HelaGSE14283 18523032 18523059 27 0
Oct1 H2O2-HelaGSE14283 18544567 18544598 31 0
Oct1 H2O2-HelaGSE14283 18579189 18579219 30 0
Oct1 H2O2-HelaGSE14283 18644094 18644133 39 0
Oct1 HelaGSE14283 18509588 18509623 35 0
Oct1 HelaGSE14283 18511762 18511797 35 0
Oct1 HelaGSE14283 18523030 18523064 34 0
Oct1 HelaGSE14283 18525825 18525856 31 0
Oct1 HelaGSE14283 18531060 18531103 43 0
Oct1 HelaGSE14283 18544563 18544604 41 0
Oct1 HelaGSE14283 18559502 18559534 32 0
Oct1 HelaGSE14283 18574561 18574627 66 0
Oct1 HelaGSE14283 18577075 18577135 60 0
Oct1 HelaGSE14283 18597124 18597152 28 0
Oct1 HelaGSE14283 18610559 18610591 32 0
Oct1 HelaGSE14283 18633150 18633181 31 0
Oct1 HelaGSE14283 18644094 18644144 50 0
P300 T30-glioblastomaGSE21026 18513970 18516252 2282 0
P300 T30-glioblastomaGSE21026 18673415 18674322 907 0
hScc1 BcellGSE12603 18672247 18672645 398 0
hScc1 CdLSGSE12603 18672096 18672645 549 0
hScc1 G2GSE9613 18577008 18577225 217 0
hScc1 G2GSE9613 18596429 18596966 537 0
p63 keratinocytesGSE17611 18564762 18565777 1015 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-let-7d hsa-let-7d 9 20652617
hsa-let-7d hsa-let-7d 9 20652617
hsa-let-7d* hsa-let-7d 9 20652617
hsa-let-7d* hsa-let-7d 9 20652617
hsa-miR-10b hsa-mir-10b 2 19585508
hsa-miR-10b hsa-mir-10b 2 19585508
hsa-miR-10b* hsa-mir-10b 2 19585508
hsa-miR-10b* hsa-mir-10b 2 19585508
hsa-miR-129* hsa-mir-129-1 7 19521961
hsa-miR-129* hsa-mir-129-1 7 19521961
hsa-miR-129-3p hsa-mir-129-2 11 19521961
hsa-miR-129-3p hsa-mir-129-2 11 19521961
hsa-miR-129-5p hsa-mir-129-1 7 19521961
hsa-miR-129-5p hsa-mir-129-2 11 19521961
hsa-miR-129-5p hsa-mir-129-1 7 19521961
hsa-miR-129-5p hsa-mir-129-2 11 19521961
hsa-miR-137 hsa-mir-137 1 19521961
hsa-miR-137 hsa-mir-137 1 19521961
hsa-miR-146a hsa-mir-146a 5 19585508
hsa-miR-146a hsa-mir-146a 5 19635561
hsa-miR-146a hsa-mir-146a 5 19585508
hsa-miR-146a hsa-mir-146a 5 19635561
hsa-miR-146a* hsa-mir-146a 5 19585508
hsa-miR-146a* hsa-mir-146a 5 19635561
hsa-miR-146a* hsa-mir-146a 5 19585508
hsa-miR-146a* hsa-mir-146a 5 19635561
hsa-miR-146b-3p hsa-mir-146b 10 19585508
hsa-miR-146b-3p hsa-mir-146b 10 19635561
hsa-miR-146b-3p hsa-mir-146b 10 19585508
hsa-miR-146b-3p hsa-mir-146b 10 19635561
hsa-miR-146b-5p hsa-mir-146b 10 19585508
hsa-miR-146b-5p hsa-mir-146b 10 19635561
hsa-miR-146b-5p hsa-mir-146b 10 19585508
hsa-miR-146b-5p hsa-mir-146b 10 19635561
hsa-miR-206 hsa-mir-206 6 20519629
hsa-miR-206 hsa-mir-206 6 20519629
hsa-miR-22 hsa-mir-22 17 20842113
hsa-miR-22 hsa-mir-22 17 20842113
hsa-miR-22* hsa-mir-22 17 20842113
hsa-miR-22* hsa-mir-22 17 20842113
hsa-miR-23a hsa-mir-23a 19 20652617
hsa-miR-23a hsa-mir-23a 19 20652617
hsa-miR-23a* hsa-mir-23a 19 20652617
hsa-miR-23a* hsa-mir-23a 19 20652617
hsa-miR-26a hsa-mir-26a-1 3 20652617
hsa-miR-26a hsa-mir-26a-2 12 20652617
hsa-miR-26a hsa-mir-26a-1 3 20652617
hsa-miR-26a hsa-mir-26a-2 12 20652617
hsa-miR-27a hsa-mir-27a 19 16452179
hsa-miR-27a hsa-mir-27a 19 16452179
hsa-miR-27a* hsa-mir-27a 19 16452179
hsa-miR-27a* hsa-mir-27a 19 16452179
hsa-miR-27b hsa-mir-27b 9 16452179
hsa-miR-27b hsa-mir-27b 9 16452179
hsa-miR-27b* hsa-mir-27b 9 16452179
hsa-miR-27b* hsa-mir-27b 9 16452179
hsa-miR-30a hsa-mir-30a 6 20652617
hsa-miR-30a hsa-mir-30a 6 20652617
hsa-miR-30a* hsa-mir-30a 6 20652617
hsa-miR-30a* hsa-mir-30a 6 20652617
hsa-miR-34a hsa-mir-34a 1 21224215
hsa-miR-34a hsa-mir-34a 1 20213410
hsa-miR-34a hsa-mir-34a 1 21224215
hsa-miR-34a hsa-mir-34a 1 20213410
hsa-miR-34a* hsa-mir-34a 1 21224215
hsa-miR-34a* hsa-mir-34a 1 20213410
hsa-miR-34a* hsa-mir-34a 1 21224215
hsa-miR-34a* hsa-mir-34a 1 20213410
hsa-miR-34b hsa-mir-34b 11 20213410
hsa-miR-34b hsa-mir-34b 11 20213410
hsa-miR-34b* hsa-mir-34b 11 20213410
hsa-miR-34b* hsa-mir-34b 11 20213410
hsa-miR-34c-3p hsa-mir-34c 11 20213410
hsa-miR-34c-3p hsa-mir-34c 11 20213410
hsa-miR-34c-5p hsa-mir-34c 11 20213410
hsa-miR-34c-5p hsa-mir-34c 11 20213410
hsa-miR-449a hsa-mir-449a 5 19252524
hsa-miR-449a hsa-mir-449a 5 19252524
hsa-miR-512-3p hsa-mir-512-1 19 19503096
hsa-miR-512-3p hsa-mir-512-2 19 19503096
hsa-miR-512-3p hsa-mir-512-1 19 19503096
hsa-miR-512-3p hsa-mir-512-2 19 19503096
hsa-miR-512-5p hsa-mir-512-1 19 19503096
hsa-miR-512-5p hsa-mir-512-2 19 19503096
hsa-miR-512-5p hsa-mir-512-1 19 19503096
hsa-miR-512-5p hsa-mir-512-2 19 19503096
hsa-miR-9 hsa-mir-9-1 1 19521961
hsa-miR-9 hsa-mir-9-2 5 19521961
hsa-miR-9 hsa-mir-9-3 15 19521961
hsa-miR-9 hsa-mir-9-1 1 19521961
hsa-miR-9 hsa-mir-9-2 5 19521961
hsa-miR-9 hsa-mir-9-3 15 19521961
hsa-miR-9* hsa-mir-9-1 1 20519629
hsa-miR-9* hsa-mir-9-2 5 20519629
hsa-miR-9* hsa-mir-9-3 15 20519629
hsa-miR-9* hsa-mir-9-1 1 19521961
hsa-miR-9* hsa-mir-9-1 1 20519629
hsa-miR-9* hsa-mir-9-2 5 20519629
hsa-miR-9* hsa-mir-9-3 15 20519629
hsa-miR-9* hsa-mir-9-1 1 19521961
hsa-miR-93 hsa-mir-93 7 20519629
hsa-miR-93 hsa-mir-93 7 20519629
hsa-miR-93* hsa-mir-93 7 20519629
hsa-miR-93* hsa-mir-93 7 20519629
No data
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
23692 mRNA HDAC9 chr7 18308608 18767116 7341 EST chr7 18704958 18712299 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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