AutismKB 2.0

Annotation Detail for MATR3


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Basic Information Top
Gene Symbol:MATR3 ( DKFZp686K0542,DKFZp686K23100,KIAA0723,MGC9105,MPD2,VCPDM )
Gene Full Name: matrin 3
Band: 5q31.2
Quick LinksEntrez ID:9782; OMIM: 164015,606070; Uniprot ID:MATR3_HUMAN; ENSEMBL ID: ENSG00000015479; HGNC ID: 6912
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
2N-acetylserine.
3N6-acetyllysine.
22Phosphoserine.
118Phosphoserine.
188Phosphoserine.
195Phosphoserine.
206Phosphoserine.
208Phosphoserine.
397Phosphoserine.
473N6-acetyllysine.
522N6-acetyllysine.
533Phosphoserine.
571N6-acetyllysine.
596Phosphoserine.
598Phosphoserine.
604Phosphoserine.
606Phosphoserine.
654Phosphoserine.
671Phosphoserine.
673Phosphoserine.
674Phosphoserine.
696Phosphoserine.
718Nuclear localization signal (Potential).
773Phosphotyrosine.
836N6-acetyllysine.
Location(AA) Modifications Resource
188Phosphoserine.Swiss-Prot 53.0
188PhosphoserinePhospho.ELM 6.0
195PhosphoserinePhospho.ELM 6.0
206PhosphoserinePhospho.ELM 6.0
208Phosphoserine.Swiss-Prot 53.0
208PhosphoserinePhospho.ELM 6.0
234PhosphoserinePhospho.ELM 6.0
397PhosphoserinePhospho.ELM 6.0
397Phosphoserine.Swiss-Prot 53.0
596PhosphoserinePhospho.ELM 6.0
596Phosphoserine.Swiss-Prot 53.0
598Phosphoserine.Swiss-Prot 53.0
598PhosphoserinePhospho.ELM 6.0
604Phosphoserine.Swiss-Prot 53.0
604PhosphoserinePhospho.ELM 6.0
644PhosphothreoninePhospho.ELM 6.0
654Phosphoserine.Swiss-Prot 53.0
654PhosphoserinePhospho.ELM 6.0
671Phosphoserine.Swiss-Prot 53.0
671PhosphoserinePhospho.ELM 6.0
673PhosphoserinePhospho.ELM 6.0
673Phosphoserine.Swiss-Prot 53.0
674Phosphoserine.Swiss-Prot 53.0
674PhosphoserinePhospho.ELM 6.0
689PhosphoserinePhospho.ELM 6.0
696Phosphoserine.Swiss-Prot 53.0
696PhosphoserinePhospho.ELM 6.0
Location(AA) Modification Resource
11Phosphoserine(CK1)HMM predict
14Phosphoserine(ATM)HMM predict
37Phosphoserine(IKK)HMM predict
54Phosphoserine(PKA)HMM predict
77O-linkedHMM predict
78O-linkedHMM predict
150Phosphothreonine(PKA)HMM predict
166Phosphothreonine(PKC)HMM predict
171Phosphotyrosine(SRC)HMM predict
188Phosphoserine(PKC)HMM predict
188Phosphoserine(PKA)HMM predict
208Phosphoserine(ATM)HMM predict
213Phosphotyrosine(Syk)HMM predict
214Phosphotyrosine(INSR)HMM predict
214Phosphotyrosine(Syk)HMM predict
214SulfotyrosineHMM predict
219Phosphotyrosine(Syk)HMM predict
243Phosphotyrosine(INSR)HMM predict
250Phosphotyrosine(Syk)HMM predict
276Phosphoserine(CK2)HMM predict
333N-linkedHMM predict
373MethylarginineHMM predict
396Phosphothreonine(PKC)HMM predict
471Phosphoserine(ATM)HMM predict
508Phosphotyrosine(Jak)HMM predict
526Phosphotyrosine(INSR)HMM predict
596Phosphoserine(PKG)HMM predict
596Phosphoserine(PKA)HMM predict
597Phosphotyrosine(PKG)HMM predict
598Phosphoserine(IKK)HMM predict
598Phosphoserine(CAMK2)HMM predict
604Phosphoserine(CDC2)HMM predict
620Phosphoserine(CK1)HMM predict
631Phosphoserine(CK1)HMM predict
639Phosphothreonine(CK2)HMM predict
674Phosphoserine(ATM)HMM predict
759Phosphoserine(CK2)HMM predict
773Phosphotyrosine(Jak)HMM predict
773Phosphotyrosine(INSR)HMM predict
773SulfotyrosineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_018834
  • Location:chr5 138657253-138694026
  • strand:+
No data
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 138657140 138658301 1161 0
H3K4me3 colorectalcancer 138658118 138659009 891 0
H3ac HepG2E 138657684 138659261 1577 0
PHF8 HeLaGSE20725 138656767 138658370 1603 0
Rb QuiescentGSE19898 138657913 138658229 316 0
Rb SenescentGSE19898 138656826 138657728 902 0
TAF HelaGSE8489 138658118 138659261 1143 0
TAF k562GSE8489 138657984 138659261 1277 0
hScc1 BcellGSE12603 138656963 138658181 1218 0
p130 SenescentGSE19898 138656790 138658376 1586 0
p130 shRbSenescentGSE19898 138656790 138658501 1711 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-130a hsa-mir-130a 11 19849700
hsa-miR-130a* hsa-mir-130a 11 19849700
hsa-miR-155 hsa-mir-155 21 17881434
hsa-miR-155* hsa-mir-155 21 17881434
hsa-miR-200b hsa-mir-200b 1 19849700
hsa-miR-200b* hsa-mir-200b 1 19849700
hsa-miR-203 hsa-mir-203 14 19849700
hsa-miR-210 hsa-mir-210 11 19849700
hsa-miR-382 hsa-mir-382 14 19849700
hsa-miR-484 hsa-mir-484 16 19849700
ID in Tarbase Data Type Support Type miRNA Gene Direct Support Publication
481 Unknown TRUE miR-155 MATR3 Reporter assay 17881434
Ensembl Protein Type Differentially expressed in Pathology or Event Mis Regulation Gene Expression Tumour Involvement
ENSG00000015479 "activated B and T cells - B-cell development, smooth muscle, endothelium" B-cell lymphomas up regulated "epithelium, leukocyte, lymphocyte, macrophage, muscle cell" "benign tumour, malignant tumour, carcinoma, leukaemia, sarcoma"
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
21527 mRNA MATR3 chr5 138657253 138694023 553 EST chr5 138693425 138693978Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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