AutismKB 2.0

Annotation Detail for RNF40


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Basic Information Top
Gene Symbol:RNF40 ( BRE1B,DKFZp686K191,KIAA0661,MGC13051,RBP95,STARING )
Gene Full Name: ring finger protein 40
Band: 16p11.2
Quick LinksEntrez ID:9810; OMIM: 607700; Uniprot ID:BRE1B_HUMAN; ENSEMBL ID: ENSG00000103549; HGNC ID: 16867
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
644Phosphothreonine.
Location(AA) Modifications Resource
644Phosphothreonine.Swiss-Prot 53.0
644PhosphothreoninePhospho.ELM 6.0
Location(AA) Modification Resource
23Phosphoserine(CK2)HMM predict
42Phosphoserine(CK2)HMM predict
86Phosphothreonine(PKA)HMM predict
136Phosphothreonine(CDK)HMM predict
136Phosphothreonine(MAPK)HMM predict
219Phosphoserine(IKK)HMM predict
259Phosphoserine(CK1)HMM predict
312Phosphotyrosine(INSR)HMM predict
314Phosphoserine(ATM)HMM predict
529Phosphothreonine(CDC2)HMM predict
529Phosphothreonine(CDK)HMM predict
541O-linkedHMM predict
556Phosphoserine(IKK)HMM predict
571O-linkedHMM predict
572O-linkedHMM predict
573O-linkedHMM predict
574O-linkedHMM predict
575O-linkedHMM predict
621O-linkedHMM predict
665Phosphoserine(IKK)HMM predict
665Phosphoserine(ATM)HMM predict
665Phosphoserine(PKG)HMM predict
665Phosphoserine(PKC)HMM predict
718Phosphoserine(PKG)HMM predict
950S-palmitoylHMM predict
951S-palmitoylHMM predict
985LysineHMM predict
986S-farnesylHMM predict
986CysteineHMM predict
987AsparagineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_014771
  • Location:chr16 30681130-30694036
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Rb QuiescentGSE19898 30680835 30681355 520 36
Rb shRbQuiescentGSE19898 30680937 30681247 310 39
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 30693821 30694936 1115 342
H3ac HepG2E 30694899 30695188 289 1007
P300 T0-glioblastomaGSE21026 30705717 30706575 858 12110
P300 T30-glioblastomaGSE21026 30705681 30706555 874 12082
PHF8 HeLaGSE20725 30693802 30695467 1665 598
PHF8 HeLaGSE20725 30704956 30706491 1535 11687
Rb SenescentGSE19898 30705182 30705459 277 11284
Rb shRbQuiescentGSE19898 30705212 30705499 287 11319
Stat6 IL-4-hr1GSE17850 30704572 30705356 784 10928
TAF HelaGSE8489 30693933 30695188 1255 524
TAFII hESGSE17917 30705723 30706404 681 12027
TFAP2C MCF7GSE21234 30694696 30695140 444 882
VDR GM10861-stimGSE22484 30693643 30695530 1887 550
hScc1 BcellGSE12603 30694465 30694899 434 646
hScc1 BcellGSE12603 30702106 30702777 671 8405
p130 QuiescentGSE19898 30705328 30705494 166 11375
p130 SenescentGSE19898 30705791 30706243 452 11981
p130 shRbSenescentGSE19898 30705805 30706292 487 12012
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 30688155 30688511 356 0
CTCF G2GSE9613 30691976 30692359 383 0
H3ac HepG2E 30681417 30683463 2046 0
Oct1 H2O2-HelaGSE14283 30687078 30687106 28 0
Oct1 HelaGSE14283 30685032 30685083 51 0
Oct1 HelaGSE14283 30685971 30686002 31 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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