AutismKB 2.0

Annotation Detail for FAM20B


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Basic Information Top
Gene Symbol:FAM20B ( gxk1 )
Gene Full Name: family with sequence similarity 20, member B
Band: 1q25.2
Quick LinksEntrez ID:9917; OMIM: 611063; Uniprot ID:XYLK_HUMAN; ENSEMBL ID: ENSG00000116199; HGNC ID: 23017
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
193N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
No data
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_014864
  • Location:chr1 177261696-177312315
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 177261307 177261680 373 203
H3K4me3 colorectalcancer 177260971 177261355 384 534
RARA MCF7GSE15244 177252511 177254048 1537 8417
RARG MCF7GSE15244 177252664 177254048 1384 8341
TFAP2C MCF7GSE21234 177252726 177253274 548 8697
p130 SenescentGSE19898 177244369 177244685 316 17170
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 177262006 177262300 294 0
CTCF G2GSE9613 177304796 177304987 191 0
GABP k562GSE8489 177282778 177282996 218 0
Gata1 K562GSE18868 177282618 177283703 1085 0
Gata2 K562GSE18868 177282601 177283664 1063 0
H3K4me3 colorectalcancer 177262514 177263294 780 0
H3ac HepG2E 177262550 177263691 1141 0
H3ac HepG2E 177265669 177266076 407 0
Myc K562GSE19551 177275708 177276014 306 0
Myc K562GSE19551 177282607 177283588 981 0
Oct1 H2O2-HelaGSE14283 177290673 177290718 45 0
Oct1 HelaGSE14283 177290672 177290715 43 0
PHF8 HeLaGSE20725 177260939 177262932 1993 0
PHF8 Hs68plusFBSGSE20725 177261223 177262999 1776 0
RARA MCF7GSE15244 177274196 177274479 283 0
Rb GrowingGSE19898 177282773 177282967 194 0
TAF k562GSE8489 177262624 177263728 1104 0
p63 keratinocytesGSE17611 177274542 177275487 945 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
1986 mRNA FAM20B chr1 175726730 175777354 1050 EST chr1 175752010 175753060 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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