Variant Details for SLCO1B1
Basic Information Top
| Gene Symbol: | SLCO1B1 ( LST-1,LST1,MGC133282,OATP-C,OATP1B1,OATP2,OATPC,SLC21A6 ) |
|---|---|
| Gene Full Name: | solute carrier organic anion transporter family, member 1B1 |
| Band: | 12p12.1 |
| Quick Links | Entrez ID:10599; OMIM: 604843; Uniprot ID:SO1B1_HUMAN; ENSEMBL ID: ENSG00000134538; HGNC ID: 10959 |
| Relate to Another Database: | SFARIGene; denovo-db |
Variant Statistic TopClick the link of the category-specific score to view different category of evidences. The categories without any evidences are hidden by default. Chromosome coordinates: hg19
| Genetic Category | CNVs/SVs | de novo Mutations | Mosaics SNVs | NGS Other Mutations | Low-Scale Gene Mutations | Linkage Regions | Total |
|---|---|---|---|---|---|---|---|
| Number | 3 | 2 | 0 | 0 | 0 | 1 | 6 |
CNVs/SVs Top| CNV ID | Chr | Band | Start | End | Size | Gain/Loss | UCSC Browser | Reference |
|---|---|---|---|---|---|---|---|---|
| AutCNV0004299 | 12 | 12p11.22-p12.3 | 17015267 | 29997799 | 12982532 | loss | external link | Sanders, 2011 |
| AutCNV0003831 | 12 | 12p12.3-p11.22 | 17016260 | 29990846 | 12974586 | loss | external link | Levy, 2011 |
| AutCNV0003342 | 12 | 12p12.1 | 21352541 | 21526883 | 174342 | loss | external link | Gai, 2011 |
NGS de novo Mutations TopiFish (integrated Functional inference of SNVs in human) is based on gene/gene family customized models to classify missense mutations.
| Chr | Pos | Ref | Alt | Coding | AA | Validated Method | iFish Prediction | iFish Probability | Reference |
|---|---|---|---|---|---|---|---|---|---|
| 12 | 21353467 | C | G | Sanger sequencing | neutral | 0.0261 | De Rubeis S, 2014 | ||
| 12 | 21353475 | A | T | Sanger sequencing | deleterious | 0.919 | De Rubeis S, 2014 |
NGS Mosaic Mutations Top| Chr | Position | Ref | Alt | Genotype | Validated Method | Reference |
|---|---|---|---|---|---|---|
| No related data! | ||||||
NGS Other Mutations Top| Chr | Pos | Ref | Alt | Coding | AA | Validated | iFish Prediction | iFish Probability | Reference |
|---|---|---|---|---|---|---|---|---|---|
| No related data! | |||||||||
Low-Scale Gene Mutations Top| Chr | Pos | Ref | Alt | Coding | AA | Validated | iFish Prediction | iFish Probability | Reference |
|---|---|---|---|---|---|---|---|---|---|
| No related data! | |||||||||
Linkage Regions Top| Linkage Name | Band | Chr | Marker | LOD | NPL | P Value | Reference |
|---|---|---|---|---|---|---|---|
| AutLD0000004 | 12p12.1 | 12 | D12S1591 | 1.5 | - | - | McCauley, 2005 |