Variant Details for AGAP2
Basic Information Top
| Gene Symbol: | AGAP2 ( CENTG1,FLJ16430,GGAP2,KIAA0167,PIKE ) |
|---|---|
| Gene Full Name: | ArfGAP with GTPase domain, ankyrin repeat and PH domain 2 |
| Band: | 12q14.1 |
| Quick Links | Entrez ID:116986; OMIM: 605476; Uniprot ID:AGAP2_HUMAN; ENSEMBL ID: ENSG00000135439; HGNC ID: 16921 |
| Relate to Another Database: | SFARIGene; denovo-db |
Variant Statistic TopClick the link of the category-specific score to view different category of evidences. The categories without any evidences are hidden by default. Chromosome coordinates: hg19
| Genetic Category | CNVs/SVs | de novo Mutations | Mosaics SNVs | NGS Other Mutations | Low-Scale Gene Mutations | Linkage Regions | Total |
|---|---|---|---|---|---|---|---|
| Number | 3 | 2 | 0 | 0 | 0 | 0 | 5 |
CNVs/SVs Top| CNV ID | Chr | Band | Start | End | Size | Gain/Loss | UCSC Browser | Reference |
|---|---|---|---|---|---|---|---|---|
| AutCNV0000102 | 12 | 12q12-24.33 | 46092533 | 132022120 | 85929587 | gain | external link | Szatmari, 2007 |
| AutCNV0000823 | 12 | 12q13.2-14.1 | 55932655 | 60493348 | 4560693 | gain | external link | Pinto, 2010 |
| AutCNV0004301 | 12 | 12q13.2-q14.1 | 55932655 | 60493348 | 4560693 | gain | external link | Sanders, 2011 |
NGS de novo Mutations TopiFish (integrated Functional inference of SNVs in human) is based on gene/gene family customized models to classify missense mutations.
| Chr | Pos | Ref | Alt | Coding | AA | Validated Method | iFish Prediction | iFish Probability | Reference |
|---|---|---|---|---|---|---|---|---|---|
| 12 | 58131129 | G | C | PCR and MiSeq | neutral | 0.016 | Iossifov I, 2012 | ||
| 12 | 58125237 | C | T | Sanger sequencing | neutral | 0.1263 | De Rubeis S, 2014 |
NGS Mosaic Mutations Top| Chr | Position | Ref | Alt | Genotype | Validated Method | Reference |
|---|---|---|---|---|---|---|
| No related data! | ||||||
NGS Other Mutations Top| Chr | Pos | Ref | Alt | Coding | AA | Validated | iFish Prediction | iFish Probability | Reference |
|---|---|---|---|---|---|---|---|---|---|
| No related data! | |||||||||
Low-Scale Gene Mutations Top| Chr | Pos | Ref | Alt | Coding | AA | Validated | iFish Prediction | iFish Probability | Reference |
|---|---|---|---|---|---|---|---|---|---|
| No related data! | |||||||||
Linkage Regions Top| Linkage Name | Band | Chr | Marker | LOD | NPL | P Value | Reference |
|---|---|---|---|---|---|---|---|
| No related data! | |||||||