Variant Details for LINGO2
Basic Information Top
| Gene Symbol: | LINGO2 ( FLJ31810,LERN3,LRRN6C ) |
|---|---|
| Gene Full Name: | leucine rich repeat and Ig domain containing 2 |
| Band: | 9p21.2-p21.1 |
| Quick Links | Entrez ID:158038; OMIM: 609793; Uniprot ID:LIGO2_HUMAN; ENSEMBL ID: ENSG00000174482; HGNC ID: 21207 |
| Relate to Another Database: | SFARIGene; denovo-db |
Variant Statistic TopClick the link of the category-specific score to view different category of evidences. The categories without any evidences are hidden by default. Chromosome coordinates: hg19
| Genetic Category | CNVs/SVs | de novo Mutations | Mosaics SNVs | NGS Other Mutations | Low-Scale Gene Mutations | Linkage Regions | Total |
|---|---|---|---|---|---|---|---|
| Number | 17 | 1 | 0 | 0 | 0 | 1 | 19 |
CNVs/SVs Top| CNV ID | Chr | Band | Start | End | Size | Gain/Loss | UCSC Browser | Reference |
|---|---|---|---|---|---|---|---|---|
| AutCNV0000088 | 9 | 9p21.1 | 28124200 | 31359900 | 3235700 | gain | external link | Szatmari, 2007 |
| AutCNV0000084 | 9 | 9p13.3-24.3 | 249391 | 33926500 | 33677109 | gain | external link | Szatmari, 2007 |
| AutCNV0002732 | 9 | 9p21.1 | 28591877 | 28761593 | 169716 | loss | external link | Pinto, 2010 |
| AutCNV0001941 | 9 | 9p21.1 | 28677376 | 28775609 | 98233 | loss | external link | Pinto, 2010 |
| AutCNV0001940 | 9 | 9p21.1 | 28591877 | 28761593 | 169716 | loss | external link | Pinto, 2010 |
| AutCNV0001939 | 9 | 9p21.1 | 28591877 | 28761593 | 169716 | loss | external link | Pinto, 2010 |
| AutCNV0001276 | 9 | 9p21.1 | 28591877 | 28761593 | 169716 | loss | external link | Pinto, 2010 |
| AutCNV0000960 | 9 | 9p21.1 | 28550756 | 28582398 | 31642 | loss | external link | Pinto, 2010 |
| AutCNV0000948 | 9 | 9p21.1 | 28534489 | 28566849 | 32360 | loss | external link | Pinto, 2010 |
| AutCNV0003642 | 9 | 9p21.1 | 28577961 | 28628500 | 50539 | loss | external link | Gai, 2011 |
| AutCNV0003641 | 9 | 9p21.1 | 28577961 | 28620312 | 42351 | loss | external link | Gai, 2011 |
| AutCNV0003306 | 9 | 9p21.1 | 28550930 | 28585455 | 34525 | loss | external link | Gai, 2011 |
| AutCNV0003305 | 9 | 9p21.1 | 28550930 | 28582398 | 31468 | loss | external link | Gai, 2011 |
| AutCNV0003304 | 9 | 9p21.1 | 28529410 | 28793773 | 264363 | loss | external link | Gai, 2011 |
| AutCNV0003303 | 9 | 9p21.1 | 28519666 | 28793773 | 274107 | loss | external link | Gai, 2011 |
| AutCNV0004687 | 9 | 9p21.1 | 28464218 | 28596286 | 132068 | loss | external link | Gazzellone MJ, 2014 |
| AutCNV0004686 | 9 | 9p21.1 | 28491679 | 28630598 | 138919 | loss | external link | Gazzellone MJ, 2014 |
NGS de novo Mutations TopiFish (integrated Functional inference of SNVs in human) is based on gene/gene family customized models to classify missense mutations.
| Chr | Pos | Ref | Alt | Coding | AA | Validated Method | iFish Prediction | iFish Probability | Reference |
|---|---|---|---|---|---|---|---|---|---|
| 9 | 28359590 | A | T | Sanger and Sequenom | Michaelson JJ, 2012 |
NGS Mosaic Mutations Top| Chr | Position | Ref | Alt | Genotype | Validated Method | Reference |
|---|---|---|---|---|---|---|
| No related data! | ||||||
NGS Other Mutations Top| Chr | Pos | Ref | Alt | Coding | AA | Validated | iFish Prediction | iFish Probability | Reference |
|---|---|---|---|---|---|---|---|---|---|
| No related data! | |||||||||
Low-Scale Gene Mutations Top| Chr | Pos | Ref | Alt | Coding | AA | Validated | iFish Prediction | iFish Probability | Reference |
|---|---|---|---|---|---|---|---|---|---|
| No related data! | |||||||||
Linkage Regions Top| Linkage Name | Band | Chr | Marker | LOD | NPL | P Value | Reference |
|---|---|---|---|---|---|---|---|
| AutLD0000078 | 9p21.2-21.3 | 9 | D9S171/D9S161 | 2.12 | - | - | Lamb, 2005 |