Variant Details for LIMCH1
Basic Information Top
| Gene Symbol: | LIMCH1 ( DKFZp434I0312,DKFZp686A01247,DKFZp686B2470,DKFZp686G18243,DKFZp686G2094,DKFZp781C1754,DKFZp781I1455,LIMCH1A,LMO7B,MGC72127 ) |
|---|---|
| Gene Full Name: | LIM and calponin homology domains 1 |
| Band: | 4p13 |
| Quick Links | Entrez ID:22998; OMIM: NA; Uniprot ID:LIMC1_HUMAN; ENSEMBL ID: ENSG00000064042; HGNC ID: 29191 |
| Relate to Another Database: | SFARIGene; denovo-db |
Variant Statistic TopClick the link of the category-specific score to view different category of evidences. The categories without any evidences are hidden by default. Chromosome coordinates: hg19
| Genetic Category | CNVs/SVs | de novo Mutations | Mosaics SNVs | NGS Other Mutations | Low-Scale Gene Mutations | Linkage Regions | Total |
|---|---|---|---|---|---|---|---|
| Number | 1 | 2 | 0 | 0 | 0 | 0 | 3 |
CNVs/SVs Top| CNV ID | Chr | Band | Start | End | Size | Gain/Loss | UCSC Browser | Reference |
|---|---|---|---|---|---|---|---|---|
| AutCNV0000263 | 4 | 4p12-13 | 41205243 | 49005243 | 7800000 | gain | external link | Sabaratnam, 2000 |
NGS de novo Mutations TopiFish (integrated Functional inference of SNVs in human) is based on gene/gene family customized models to classify missense mutations.
| Chr | Pos | Ref | Alt | Coding | AA | Validated Method | iFish Prediction | iFish Probability | Reference |
|---|---|---|---|---|---|---|---|---|---|
| 4 | 41646619 | G | A | Sanger sequencing | De Rubeis S, 2014 | ||||
| 4 | 41646620 | G | A | Sanger sequencing | neutral | 0.4164 | De Rubeis S, 2014 |
NGS Mosaic Mutations Top| Chr | Position | Ref | Alt | Genotype | Validated Method | Reference |
|---|---|---|---|---|---|---|
| No related data! | ||||||
NGS Other Mutations Top| Chr | Pos | Ref | Alt | Coding | AA | Validated | iFish Prediction | iFish Probability | Reference |
|---|---|---|---|---|---|---|---|---|---|
| No related data! | |||||||||
Low-Scale Gene Mutations Top| Chr | Pos | Ref | Alt | Coding | AA | Validated | iFish Prediction | iFish Probability | Reference |
|---|---|---|---|---|---|---|---|---|---|
| No related data! | |||||||||
Linkage Regions Top| Linkage Name | Band | Chr | Marker | LOD | NPL | P Value | Reference |
|---|---|---|---|---|---|---|---|
| No related data! | |||||||