Variant Details for SSPO
Basic Information Top
| Gene Symbol: | SSPO ( FLJ36112,FLJ45737,KIAA2036,SCO-spondin ) |
|---|---|
| Gene Full Name: | SCO-spondin homolog (Bos taurus) |
| Band: | 7q36.1 |
| Quick Links | Entrez ID:23145; OMIM: NA; Uniprot ID:SSPO_HUMAN; ENSEMBL ID: ENSG00000197558; HGNC ID: 21998 |
| Relate to Another Database: | SFARIGene; denovo-db |
Variant Statistic TopClick the link of the category-specific score to view different category of evidences. The categories without any evidences are hidden by default. Chromosome coordinates: hg19
| Genetic Category | CNVs/SVs | de novo Mutations | Mosaics SNVs | NGS Other Mutations | Low-Scale Gene Mutations | Linkage Regions | Total |
|---|---|---|---|---|---|---|---|
| Number | 2 | 1 | 0 | 0 | 0 | 2 | 5 |
CNVs/SVs Top| CNV ID | Chr | Band | Start | End | Size | Gain/Loss | UCSC Browser | Reference |
|---|---|---|---|---|---|---|---|---|
| AutCNV0002679 | 7 | 7q36.1 | 149458128 | 149528262 | 70134 | gain | external link | Pinto, 2010 |
| AutCNV0002678 | 7 | 7q36.1 | 149451480 | 149542524 | 91044 | loss | external link | Pinto, 2010 |
NGS de novo Mutations TopiFish (integrated Functional inference of SNVs in human) is based on gene/gene family customized models to classify missense mutations.
| Chr | Pos | Ref | Alt | Coding | AA | Validated Method | iFish Prediction | iFish Probability | Reference |
|---|---|---|---|---|---|---|---|---|---|
| 7 | 149519648 | C | T | p.Arg4380Trp | Sanger | neutral | 0.0647 | Krumm N, 2015 |
NGS Mosaic Mutations Top| Chr | Position | Ref | Alt | Genotype | Validated Method | Reference |
|---|---|---|---|---|---|---|
| No related data! | ||||||
NGS Other Mutations Top| Chr | Pos | Ref | Alt | Coding | AA | Validated | iFish Prediction | iFish Probability | Reference |
|---|---|---|---|---|---|---|---|---|---|
| No related data! | |||||||||
Low-Scale Gene Mutations Top| Chr | Pos | Ref | Alt | Coding | AA | Validated | iFish Prediction | iFish Probability | Reference |
|---|---|---|---|---|---|---|---|---|---|
| No related data! | |||||||||
Linkage Regions Top| Linkage Name | Band | Chr | Marker | LOD | NPL | P Value | Reference |
|---|---|---|---|---|---|---|---|
| AutLD0000059 | 7q36.1 | 7 | D7S483 | 2.13 | - | - | Liu, 2001 |
| AutLD0000093 | 7q36.1 | 7 | D7S483 | 2 | - | - | Molloy, 2005 |