Variant Details for SACS
Basic Information Top
| Gene Symbol: | SACS ( ARSACS,DKFZp686B15167,DNAJC29 ) |
|---|---|
| Gene Full Name: | spastic ataxia of Charlevoix-Saguenay (sacsin) |
| Band: | 13q12.12 |
| Quick Links | Entrez ID:26278; OMIM: 604490; Uniprot ID:SACS_HUMAN; ENSEMBL ID: ENSG00000151835; HGNC ID: 10519 |
| Relate to Another Database: | SFARIGene; denovo-db |
Variant Statistic TopClick the link of the category-specific score to view different category of evidences. The categories without any evidences are hidden by default. Chromosome coordinates: hg19
| Genetic Category | CNVs/SVs | de novo Mutations | Mosaics SNVs | NGS Other Mutations | Low-Scale Gene Mutations | Linkage Regions | Total |
|---|---|---|---|---|---|---|---|
| Number | 1 | 2 | 0 | 0 | 0 | 1 | 4 |
CNVs/SVs Top| CNV ID | Chr | Band | Start | End | Size | Gain/Loss | UCSC Browser | Reference |
|---|---|---|---|---|---|---|---|---|
| AutCNV0000044 | 13 | 13q12.12 | 23604100 | 24794300 | 1190200 | gain | external link | Szatmari, 2007 |
NGS de novo Mutations TopiFish (integrated Functional inference of SNVs in human) is based on gene/gene family customized models to classify missense mutations.
| Chr | Pos | Ref | Alt | Coding | AA | Validated Method | iFish Prediction | iFish Probability | Reference |
|---|---|---|---|---|---|---|---|---|---|
| 13 | 23914892 | C | G | PCR or Sanger sequencing | deleterious | 0.7641 | Iossifov I, 2014 | ||
| 13 | 23905698 | A | G | c.12317T>C | p.Leu4106Pro | Not_tested | deleterious | 0.8908 | Takata A, 2018 |
NGS Mosaic Mutations Top| Chr | Position | Ref | Alt | Genotype | Validated Method | Reference |
|---|---|---|---|---|---|---|
| No related data! | ||||||
NGS Other Mutations Top| Chr | Pos | Ref | Alt | Coding | AA | Validated | iFish Prediction | iFish Probability | Reference |
|---|---|---|---|---|---|---|---|---|---|
| No related data! | |||||||||
Low-Scale Gene Mutations Top| Chr | Pos | Ref | Alt | Coding | AA | Validated | iFish Prediction | iFish Probability | Reference |
|---|---|---|---|---|---|---|---|---|---|
| No related data! | |||||||||
Linkage Regions Top| Linkage Name | Band | Chr | Marker | LOD | NPL | P Value | Reference |
|---|---|---|---|---|---|---|---|
| AutLD0000154 | 13q12.11-q12.3 | 13 | rs6490970 | 1.93 | - | - | Allen-Brady, 2010 |