AutismKB 2.0

Variant Details for HCG26


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Basic Information Top
Gene Symbol:HCG26 ( 3.8-1,NCRNA00191,bCX205D4.4,bPG181B23.4 )
Gene Full Name: HLA complex group 26 (non-protein coding)
Band: 6p21.3
Quick LinksEntrez ID:352961; OMIM: NA; Uniprot ID:; ENSEMBL ID: ; HGNC ID: 29671
Relate to Another Database: SFARIGene; denovo-db
Variant Statistic Top

Click the link of the category-specific score to view different category of evidences. The categories without any evidences are hidden by default. Chromosome coordinates: hg19
Genetic Category CNVs/SVs de novo Mutations Mosaics SNVs NGS Other Mutations Low-Scale Gene Mutations Linkage Regions Total
Number 6 0 0 0 0 0 6
CNVs/SVs Top
CNV ID Chr Band Start End Size Gain/Loss UCSC Browser Reference
AutCNV0000488 6 6p21.32-21.33 31405443 32199000 793557 gain external link Gregory, 2009
AutCNV0002586 6 6p21.33 31360255 31453640 93385 gain external link Pinto, 2010
AutCNV0001802 6 6p21.33 31360255 31454365 94110 gain external link Pinto, 2010
AutCNV0001801 6 6p21.33 31356842 31454887 98045 loss external link Pinto, 2010
AutCNV0001800 6 6p21.33 31356842 31454365 97523 gain external link Pinto, 2010
AutCNV0000699 6 6p21 29792021 45092022 15300001 gain external link Berkel, 2010
NGS de novo Mutations Top
iFish (integrated Functional inference of SNVs in human) is based on gene/gene family customized models to classify missense mutations.
Chr Pos Ref Alt Coding AA Validated Method iFish Prediction iFish Probability Reference
No related data!
NGS Mosaic Mutations Top
Chr Position Ref Alt Genotype Validated Method Reference
No related data!
NGS Other Mutations Top
Chr Pos Ref Alt Coding AA Validated iFish Prediction iFish Probability Reference
No related data!
Low-Scale Gene Mutations Top
Chr Pos Ref Alt Coding AA Validated iFish Prediction iFish Probability Reference
No related data!
Linkage Regions Top
Linkage Name Band Chr Marker LOD NPL P Value Reference
No related data!




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Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018