Variant Details for TET2
Basic Information Top
| Gene Symbol: | TET2 ( FLJ20032,KIAA1546,MGC125715 ) |
|---|---|
| Gene Full Name: | tet oncogene family member 2 |
| Band: | 4q24 |
| Quick Links | Entrez ID:54790; OMIM: 612839; Uniprot ID:TET2_HUMAN; ENSEMBL ID: ENSG00000168769; HGNC ID: 25941 |
| Relate to Another Database: | SFARIGene; denovo-db |
Variant Statistic TopClick the link of the category-specific score to view different category of evidences. The categories without any evidences are hidden by default. Chromosome coordinates: hg19
| Genetic Category | CNVs/SVs | de novo Mutations | Mosaics SNVs | NGS Other Mutations | Low-Scale Gene Mutations | Linkage Regions | Total |
|---|---|---|---|---|---|---|---|
| Number | 0 | 3 | 1 | 1 | 0 | 2 | 7 |
CNVs/SVs Top| CNV ID | Chr | Band | Start | End | Size | Gain/Loss | UCSC Browser | Reference |
|---|---|---|---|---|---|---|---|---|
| No related data! | ||||||||
NGS de novo Mutations TopiFish (integrated Functional inference of SNVs in human) is based on gene/gene family customized models to classify missense mutations.
| Chr | Pos | Ref | Alt | Coding | AA | Validated Method | iFish Prediction | iFish Probability | Reference |
|---|---|---|---|---|---|---|---|---|---|
| 4 | 106196675 | C | T | PCR or Sanger sequencing | neutral | 0.4219 | Iossifov I, 2014 | ||
| 4 | 106155888 | G | T | p.Glu263Asp | Sanger | deleterious | 0.8304 | Krumm N, 2015 | |
| 4 | 106157491 | G | A | Sanger sequencing | neutral | 0.0824 | Yuen RK, 2016 |
NGS Mosaic Mutations Top| Chr | Position | Ref | Alt | Genotype | Validated Method | Reference |
|---|---|---|---|---|---|---|
| 4 | 106180819 | G | T | Mosaic | Krupp DR, 2017 |
NGS Other Mutations Top| Chr | Pos | Ref | Alt | Coding | AA | Validated | iFish Prediction | iFish Probability | Reference |
|---|---|---|---|---|---|---|---|---|---|
| 4 | 106156163 | G | A | Y | Cukier HN, 2014 |
Low-Scale Gene Mutations Top| Chr | Pos | Ref | Alt | Coding | AA | Validated | iFish Prediction | iFish Probability | Reference |
|---|---|---|---|---|---|---|---|---|---|
| No related data! | |||||||||
Linkage Regions Top| Linkage Name | Band | Chr | Marker | LOD | NPL | P Value | Reference |
|---|---|---|---|---|---|---|---|
| AutLD0000084 | 4q24 | 4 | D4S1647 | - | 2.87 | - | Buxbaum, 2004 |
| AutLD0000105 | 4q23-24 | 4 | D4S1591 | - | 2.53 | - | Ylisaukko-oja, 2006 |