Variant Details for PLCH2
Basic Information Top
| Gene Symbol: | PLCH2 ( PLC-eta2,PLCL4,PLCeta2 ) |
|---|---|
| Gene Full Name: | phospholipase C, eta 2 |
| Band: | 1p36.32 |
| Quick Links | Entrez ID:9651; OMIM: 612836; Uniprot ID:PLCH2_HUMAN; ENSEMBL ID: ENSG00000149527; HGNC ID: 29037 |
| Relate to Another Database: | SFARIGene; denovo-db |
Variant Statistic TopClick the link of the category-specific score to view different category of evidences. The categories without any evidences are hidden by default. Chromosome coordinates: hg19
| Genetic Category | CNVs/SVs | de novo Mutations | Mosaics SNVs | NGS Other Mutations | Low-Scale Gene Mutations | Linkage Regions | Total |
|---|---|---|---|---|---|---|---|
| Number | 7 | 1 | 2 | 0 | 0 | 0 | 10 |
CNVs/SVs Top| CNV ID | Chr | Band | Start | End | Size | Gain/Loss | UCSC Browser | Reference |
|---|---|---|---|---|---|---|---|---|
| AutCNV0000126 | 1 | 1p36 | 996262 | 2996265 | 2000003 | loss | external link | Jacquemont, 2006 |
| AutCNV0000443 | 1 | 1p36.32-36.33 | 1026808 | 3706053 | 2679245 | loss | external link | Gregory, 2009 |
| AutCNV0000442 | 1 | 1p36.32-36.33 | 869049 | 3706053 | 2837004 | gain | external link | Gregory, 2009 |
| AutCNV0000441 | 1 | 1p36.32-36.33 | 10001 | 3706053 | 3696052 | loss | external link | Gregory, 2009 |
| AutCNV0001459 | 1 | 1p36.32-36.33 | 2119833 | 2528682 | 408849 | gain | external link | Pinto, 2010 |
| AutCNV0001436 | 1 | 1p36.32 | 2330190 | 2507415 | 177225 | gain | external link | Pinto, 2010 |
| AutCNV0003119 | 1 | 1p36.32-36.33 | 10002 | 5170712 | 5160710 | loss | external link | Gai, 2011 |
NGS de novo Mutations TopiFish (integrated Functional inference of SNVs in human) is based on gene/gene family customized models to classify missense mutations.
| Chr | Pos | Ref | Alt | Coding | AA | Validated Method | iFish Prediction | iFish Probability | Reference |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 2434058 | C | T | Sanger sequencing | neutral | 0.0522 | Yuen RK, 2016 |
NGS Mosaic Mutations Top| Chr | Position | Ref | Alt | Genotype | Validated Method | Reference |
|---|---|---|---|---|---|---|
| 1 | 2411622 | G | A | mosaic | PASM | Dou Y, 2017 |
| 1 | 2411622 | G | A | High-confidence mosaics | Resequencing | Lim ET, 2017 |
NGS Other Mutations Top| Chr | Pos | Ref | Alt | Coding | AA | Validated | iFish Prediction | iFish Probability | Reference |
|---|---|---|---|---|---|---|---|---|---|
| No related data! | |||||||||
Low-Scale Gene Mutations Top| Chr | Pos | Ref | Alt | Coding | AA | Validated | iFish Prediction | iFish Probability | Reference |
|---|---|---|---|---|---|---|---|---|---|
| No related data! | |||||||||
Linkage Regions Top| Linkage Name | Band | Chr | Marker | LOD | NPL | P Value | Reference |
|---|---|---|---|---|---|---|---|
| No related data! | |||||||