Variant Details for TM9SF4
Basic Information Top
| Gene Symbol: | TM9SF4 ( KIAA0255,dJ836N17.2 ) |
|---|---|
| Gene Full Name: | transmembrane 9 superfamily protein member 4 |
| Band: | 20q11.21 |
| Quick Links | Entrez ID:9777; OMIM: NA; Uniprot ID:TM9S4_HUMAN; ENSEMBL ID: ENSG00000101337; HGNC ID: 30797 |
| Relate to Another Database: | SFARIGene; denovo-db |
Variant Statistic TopClick the link of the category-specific score to view different category of evidences. The categories without any evidences are hidden by default. Chromosome coordinates: hg19
| Genetic Category | CNVs/SVs | de novo Mutations | Mosaics SNVs | NGS Other Mutations | Low-Scale Gene Mutations | Linkage Regions | Total |
|---|---|---|---|---|---|---|---|
| Number | 1 | 3 | 0 | 0 | 0 | 1 | 5 |
CNVs/SVs Top| CNV ID | Chr | Band | Start | End | Size | Gain/Loss | UCSC Browser | Reference |
|---|---|---|---|---|---|---|---|---|
| AutCNV0004378 | 20 | 20q11.1-q11.23 | 29637396 | 35710453 | 6073057 | gain | external link | Sanders, 2011 |
NGS de novo Mutations TopiFish (integrated Functional inference of SNVs in human) is based on gene/gene family customized models to classify missense mutations.
| Chr | Pos | Ref | Alt | Coding | AA | Validated Method | iFish Prediction | iFish Probability | Reference |
|---|---|---|---|---|---|---|---|---|---|
| 20 | 30738473 | T | A | Sanger sequencing | deleterious | 0.9985 | De Rubeis S, 2014 | ||
| 20 | 30732948 | C | T | PCR or Sanger sequencing | neutral | 0.1803 | Iossifov I, 2014 | ||
| 20 | 30738473 | T | A | c.1136ATG>AAG | p.379M>K | deleterious | 0.9985 | Fromer M, 2014 |
NGS Mosaic Mutations Top| Chr | Position | Ref | Alt | Genotype | Validated Method | Reference |
|---|---|---|---|---|---|---|
| No related data! | ||||||
NGS Other Mutations Top| Chr | Pos | Ref | Alt | Coding | AA | Validated | iFish Prediction | iFish Probability | Reference |
|---|---|---|---|---|---|---|---|---|---|
| No related data! | |||||||||
Low-Scale Gene Mutations Top| Chr | Pos | Ref | Alt | Coding | AA | Validated | iFish Prediction | iFish Probability | Reference |
|---|---|---|---|---|---|---|---|---|---|
| No related data! | |||||||||
Linkage Regions Top| Linkage Name | Band | Chr | Marker | LOD | NPL | P Value | Reference |
|---|---|---|---|---|---|---|---|
| AutLD0000147 | 20q11.21-13.12 | 20 | - | - | 5.56 | - | Allen-Brady, 2008 |