Evidence Details for CDH9
Basic Information Top
| Gene Symbol: | CDH9 ( MGC125386 ) |
|---|---|
| Gene Full Name: | cadherin 9, type 2 (T1-cadherin) |
| Band: | 5p14.1 |
| Quick Links | Entrez ID:1007; OMIM: 609974; Uniprot ID:CADH9_HUMAN; ENSEMBL ID: ENSG00000113100; HGNC ID: 1768 |
| Relate to Another Database: | SFARIGene; denovo-db |
Sequences Top>CDH9|1007|nucleotide
ATGAGGACTTACCATTATATACCATTATTCATCTGGACCTATATGTTCCATACAGTTGACACCATCCTATTACAAGAAAAACCTAACAGTTATTTATCAAGCAAA
AAGATAGCGGGTCTGACAAAAGATGACGGTAAAATGCTACGTCGCACCAAGCGTGGCTGGATGTGGAATCAGTTCTTCTTATTGGAAGAGTACACAGGTACTGAC
ACACAATATGTAGGCAAGCTTCACACTGACCAAGATAAAGGAGATGGAAATTTAAAATACATACTAACAGGAGATGGGGCTGGCAGTCTATTTGTTATAGATGAA
AATACAGGAGACATTCATGCTGCAAAGAAACTAGACAGAGAAGAAAAATCTCTGTACATTCTTCGTGCCAAGGCTATAGACAGAAAAACTGGGCGGCAGGTGGAA
CCGGAATCGGAATTTATCATTAAAATACATGATATCAATGACAATGAGCCAAAATTTACAAAAGACTTATACACTGCCAGTGTTCCTGAAATGTCTGGAGTCGGT
ACATCTGTTATACAAGTAACTGCAACAGATGCAGATGACGCCAACTATGGAAATAGTGCCAAAGTGGTCTATAGCATATTGCAAGGACAGCCATATTTTTCAGTG
GACCCAGAATCAGGCATAATAAAAACTGCATTACCAGACATGAGCAGAGAAAATAGAGAGCAGTACCAGGTTGTTATACAGGCCAAAGACATGGGTGGCCAGATG
GGAGGCCTTTCTGGAACCACCACAGTGAACATCACGCTGACAGATGTCAACAACAACCCTCCTCGATTTCCCCAGAGTACGTATCAATTTAATTCTCCTGAGTCT
GTACCTCTTGGAACTCATCTTGGAAGGATAAAAGCCAATGACCCTGACGTGGGGGAAAATGCAGAAATGGAGTATAGCATTGCTGAAGGAGATGGTGCAGACATG
TTCGATGTCATCACTGACAAGGATACACAGGAAGGGATTATAACTGTCAAACAGAATTTAGATTTTGAAAATCAAATGCTCTATACTTTAAGAGTGGATGCAAGT
AACACTCACCCTGATCCACGATTCTTACACCTGGGACCTTTCAAAGATACAGCTGTGGTCAAAATATCTGTGGAAGATATAGATGAGCCTCCTGTGTTCACTAAA
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ATGAGGACTTACCATTATATACCATTATTCATCTGGACCTATATGTTCCATACAGTTGACACCATCCTATTACAAGAAAAACCTAACAGTTATTTATCAAGCAAA
AAGATAGCGGGTCTGACAAAAGATGACGGTAAAATGCTACGTCGCACCAAGCGTGGCTGGATGTGGAATCAGTTCTTCTTATTGGAAGAGTACACAGGTACTGAC
ACACAATATGTAGGCAAGCTTCACACTGACCAAGATAAAGGAGATGGAAATTTAAAATACATACTAACAGGAGATGGGGCTGGCAGTCTATTTGTTATAGATGAA
AATACAGGAGACATTCATGCTGCAAAGAAACTAGACAGAGAAGAAAAATCTCTGTACATTCTTCGTGCCAAGGCTATAGACAGAAAAACTGGGCGGCAGGTGGAA
CCGGAATCGGAATTTATCATTAAAATACATGATATCAATGACAATGAGCCAAAATTTACAAAAGACTTATACACTGCCAGTGTTCCTGAAATGTCTGGAGTCGGT
ACATCTGTTATACAAGTAACTGCAACAGATGCAGATGACGCCAACTATGGAAATAGTGCCAAAGTGGTCTATAGCATATTGCAAGGACAGCCATATTTTTCAGTG
GACCCAGAATCAGGCATAATAAAAACTGCATTACCAGACATGAGCAGAGAAAATAGAGAGCAGTACCAGGTTGTTATACAGGCCAAAGACATGGGTGGCCAGATG
GGAGGCCTTTCTGGAACCACCACAGTGAACATCACGCTGACAGATGTCAACAACAACCCTCCTCGATTTCCCCAGAGTACGTATCAATTTAATTCTCCTGAGTCT
GTACCTCTTGGAACTCATCTTGGAAGGATAAAAGCCAATGACCCTGACGTGGGGGAAAATGCAGAAATGGAGTATAGCATTGCTGAAGGAGATGGTGCAGACATG
TTCGATGTCATCACTGACAAGGATACACAGGAAGGGATTATAACTGTCAAACAGAATTTAGATTTTGAAAATCAAATGCTCTATACTTTAAGAGTGGATGCAAGT
AACACTCACCCTGATCCACGATTCTTACACCTGGGACCTTTCAAAGATACAGCTGTGGTCAAAATATCTGTGGAAGATATAGATGAGCCTCCTGTGTTCACTAAA
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>CDH9|1007|protein
MRTYHYIPLFIWTYMFHTVDTILLQEKPNSYLSSKKIAGLTKDDGKMLRRTKRGWMWNQFFLLEEYTGTDTQYVGKLHTDQDKGDGNLKYILTGDGAGSLFVIDE
NTGDIHAAKKLDREEKSLYILRAKAIDRKTGRQVEPESEFIIKIHDINDNEPKFTKDLYTASVPEMSGVGTSVIQVTATDADDANYGNSAKVVYSILQGQPYFSV
DPESGIIKTALPDMSRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTDVNNNPPRFPQSTYQFNSPESVPLGTHLGRIKANDPDVGENAEMEYSIAEGDGADM
FDVITDKDTQEGIITVKQNLDFENQMLYTLRVDASNTHPDPRFLHLGPFKDTAVVKISVEDIDEPPVFTKVSYLIEVDEDVKEGSIIGQVTAYDPDARNNLIKYS
VDRHTDMDRIFGIHSENGSIFTLKALDRESSPWHNITVTATEINNPKQSSHIPVFIRILDINDHAPEFAMYYETFVCENAKPGQLIQTVSVMDKDDPPRGHKFFF
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MRTYHYIPLFIWTYMFHTVDTILLQEKPNSYLSSKKIAGLTKDDGKMLRRTKRGWMWNQFFLLEEYTGTDTQYVGKLHTDQDKGDGNLKYILTGDGAGSLFVIDE
NTGDIHAAKKLDREEKSLYILRAKAIDRKTGRQVEPESEFIIKIHDINDNEPKFTKDLYTASVPEMSGVGTSVIQVTATDADDANYGNSAKVVYSILQGQPYFSV
DPESGIIKTALPDMSRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTDVNNNPPRFPQSTYQFNSPESVPLGTHLGRIKANDPDVGENAEMEYSIAEGDGADM
FDVITDKDTQEGIITVKQNLDFENQMLYTLRVDASNTHPDPRFLHLGPFKDTAVVKISVEDIDEPPVFTKVSYLIEVDEDVKEGSIIGQVTAYDPDARNNLIKYS
VDRHTDMDRIFGIHSENGSIFTLKALDRESSPWHNITVTATEINNPKQSSHIPVFIRILDINDHAPEFAMYYETFVCENAKPGQLIQTVSVMDKDDPPRGHKFFF
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Evidence summary TopClick the link of the category-specific score to view different category of evidences. The categories without any evidences are hidden by default.
| Evidences | Syndromic Gene | GWAS | CNV | Linkage | Association | Expression | NGS de novo | NGS Mosaic | NGS Other | Low-Scale Gene Studies | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Score (No. of Studies) | No | 3 (4) | 0 (0) | 0 (0) | 0 (0) | 0 (0) | 0 (0) | 0 (0) | 0 (1) | 0 (0) | 12 (5) |
Syndromic Autism Gene TopGenome-Wide Association Studies (By Ethnic Group) Top Family Based Association Studies: 3
| Reference | Stage | Platform | #Families | Affecteds | Result | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| #Subjects (% Women) |
ADI-R | ADOS | Diagnosis | Age (range) |
IQ (range) |
||||||
| CAUCASIAN | |||||||||||
| Ma, 2009_1 | Discovery | Illumina's Human 1M v1 Beadchip | 438 | - (-) |  |  | ASD | - - |
- - | ||
| Wang, 2009_1 | Discovery | Illumina HumanHap550 BeadChip | 780 | 1299 (-) | | | ASD | - - |
- - | ||
| Hussman, 2011_1 | Discovery | Illumina Infinium Human 1 M beadship | 597 | - (-) | | | ASD | - - |
- - | ||
Case Control Based Association Studies: 1
| Reference | Stage | Platform | ASD Cases | Normal Controls | Result | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| #Subjects (% Women) |
ADI-R | ADOS | Diagnosis | Age (range) |
IQ | #Subjects (% Women) |
Age (range) |
|||||
| CAUCASIAN | ||||||||||||
| Wang, 2009_2 | Discovery | Illumina HumanHap550 BeadChip | 1204 (-) | | | ASD | 10.3±6.6 - |
10.9±6.7 | 6491 (-) |
8.8±5.4 - | ||
CNV Studies TopLinkage Studies TopLow Scale Association Studies (by Ethnic Group) TopLarge Scale Expression Studies TopNGS de novo Mutation Studies TopNGS Mosaic SNV Studies TopNGS Other Studies Top| Reference | Source | Platform | ADI-R | ADOS | Diagnosis | Family | Affected | Validation Method | ||
|---|---|---|---|---|---|---|---|---|---|---|
| Total | Simplex | Multiplex | ||||||||
| Cukier HN, 2014 | - | Illumina HiSeq 2000 | | | ASD | 40 | - | - | 100 | HumanExome BeadChip or Sanger sequencing |
Low Scale Gene Studies TopContact Us if you are an author of a study regarding this gene and do not find your study in this table or find errors in the representation of your study details.