AutismKB 2.0

Evidence Details for LSAMP


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Basic Information Top
Gene Symbol:LSAMP ( FLJ34254,FLJ35396,FLJ37216,FLJ54658,IGLON3,LAMP )
Gene Full Name: limbic system-associated membrane protein
Band: 3q13.31
Quick LinksEntrez ID:4045; OMIM: 603241; Uniprot ID:LSAMP_HUMAN; ENSEMBL ID: ENSG00000185565; HGNC ID: 6705
Relate to Another Database: SFARIGene; denovo-db
Sequences Top
>LSAMP|4045|nucleotide
ATGGTCAGGAGAGTTCAGCCGGATCGGAAACAGTTGCCACTGGTCCTACTGAGATTGCTCTGCCTTCTTCCCACAGGACTGCCTGTTCGCAGCGTGGATTTTAAC
CGAGGCACGGACAACATCACCGTGAGGCAGGGGGACACAGCCATCCTCAGGTGCGTTGTAGAAGACAAGAACTCAAAGGTGGCCTGGTTGAACCGTTCTGGCATC
ATTTTTGCTGGACATGACAAGTGGTCTCTGGACCCACGGGTTGAGCTGGAGAAACGCCATTCTCTGGAATACAGCCTCCGAATCCAGAAGGTGGATGTCTATGAT
GAGGGTTCCTACACTTGCTCAGTTCAGACACAGCATGAGCCCAAGACCTCCCAAGTTTACTTGATCGTACAAGTCCCACCAAAGATCTCCAATATCTCCTCGGAT
GTCACTGTGAATGAGGGCAGCAACGTGACTCTGGTCTGCATGGCCAATGGCCGTCCTGAACCTGTTATCACCTGGAGACACCTTACACCAACTGGAAGGGAATTT
GAAGGAGAAGAAGAATATCTGGAGATCCTTGGCATCACCAGGGAGCAGTCAGGCAAATATGAGTGCAAAGCTGCCAACGAGGTCTCCTCGGCGGATGTCAAACAA
GTCAAGGTCACTGTGAACTATCCTCCCACTATCACAGAATCCAAGAGCAATGAAGCCACCACAGGACGACAAGCTTCACTCAAATGTGAGGCCTCGGCAGTGCCT
GCACCTGACTTTGAGTGGTACCGGGATGACACTAGGATAAATAGTGCCAATGGCCTTGAGATTAAGAGCACGGAGGGCCAGTCTTCCCTGACGGTGACCAACGTC
ACTGAGGAGCACTACGGCAACTACACCTGTGTGGCTGCCAACAAGCTGGGGGTCACCAATGCCAGCCTAGTCCTTTTCAGACCTGGGTCGGTGAGAGGAATAAAT
GGATCCATCAGTCTGGCCGTACCACTGTGGCTGCTGGCAGCATCTCTGCTCTGCCTTCTCAGCAAATGTTAA

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>LSAMP|4045|protein
MVRRVQPDRKQLPLVLLRLLCLLPTGLPVRSVDFNRGTDNITVRQGDTAILRCVVEDKNSKVAWLNRSGIIFAGHDKWSLDPRVELEKRHSLEYSLRIQKVDVYD
EGSYTCSVQTQHEPKTSQVYLIVQVPPKISNISSDVTVNEGSNVTLVCMANGRPEPVITWRHLTPTGREFEGEEEYLEILGITREQSGKYECKAANEVSSADVKQ
VKVTVNYPPTITESKSNEATTGRQASLKCEASAVPAPDFEWYRDDTRINSANGLEIKSTEGQSSLTVTNVTEEHYGNYTCVAANKLGVTNASLVLFRPGSVRGIN
GSISLAVPLWLLAASLLCLLSKC

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Evidence summary Top

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Evidences Syndromic Gene GWAS CNV Linkage Association Expression NGS de novo NGS Mosaic NGS Other Low-Scale Gene Studies Total
Score (No. of Studies) No 0 (0) 0 (1) 1 (1) 0 (0) 0 (0) 0 (0) 0 (0) 0 (1) 0 (0) 2 (3)
Syndromic Autism Gene Top
Genome-Wide Association Studies(By Ethnic Group) Top
CNV Studies Top
Reference Source Method ADI-R ADOS Diagnosis Family Individual
Total Simplex Multiplex Control Affected Control Total
Sanders, 2011 Simons Simplex Collection SNP microarray--ASD 1127 1127 - - - - -
Linkage Studies Top