Evidence Details for SH3TC1

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Basic Information Top

Gene Symbol:	SH3TC1 ( FLJ20356,FLJ32999,FLJ36243,FLJ46394 )
Gene Full Name:	SH3 domain and tetratricopeptide repeats 1
Band:	4p16.1
Quick Links	Entrez ID:54436; OMIM: NA; Uniprot ID:S3TC1_HUMAN; ENSEMBL ID: ENSG00000125089; HGNC ID: 26009
Relate to Another Database:	SFARIGene; denovo-db

Sequences Top

Nucleotide Sequence
Protein Sequence

>SH3TC1|54436|nucleotide
ATGGAGAACCTCCCTGCCGTGACCACTGAGGAGCCGACCCCCATGGGGAGGGGTCCTGTGGGACCCTCAGGAGGTGGCAGCACCCGGGACCAGGTCCGGACTGTG
GTCATGAGGCCCTCTGTGAGCTGGGAGAAAGCGGGGCCCGAGGAGGCCAAGGCGCCAGTGAGAGGCGACGAGGCTCCTCCTGCCCGCGTGGCTGGGCCTGCTGCT
GGGACCCCTCCCTGCCAGATGGGGGTTTATCCCACAGACCTGACCCTGCAGCTGCTGGCTGTGCGGAGGAAGAGCAGACTGCGGGACCCCGGCCTACAGCAGACC
CTCCGGGGCCAGCTCCGCCTGCTGGAGAATGATAGCCGGGAGATGGCCCGCGTGCTTGGGGAATTATCAGCCAGGCTGCTGTCCATCCACAGTGACCAGGACCGG
ATCGTGGTGACGTTTAAGACTTTTGAAGAAATCTGGAAGTTTTCCACCTACCATGCTCTCGGCTTCACTCATCACTGCCTGGCAAACCTGCTCATGGACCAGGCC
TTCTGGCTGCTCTTGCCCAGTGAGGAGGAGGAGACGGCCATCCAAGTCCATGTGGATGAGAACGCCTTAAGGCTGACCCACGAGAGCCTCCTCATCCAAGAAGGG
CCCTTCTTTGTCCTGTGTCCTGACCACCATGTGAGAGTGATGACGGGTCCCCGGGATGCAGGAAATGGCCCCCAGGCCCTCAGGCAGGCTTCGGGGGCACCCCAG
GGAGAGGCGGCCCCGGAAACAGACTCTTCACCGCCGAGCCCCAGCGTGTCCTCCGAGGAGGTGGCAGTGGCGGCCGCCCCGGAGCCTTTGATTCCATTTCATCAG
TGGGCTCTTAGGATCCCCCAGGACCCCATCGACGATGCCATGGGTGGCCCTGTGATGCCCGGCAACCCGCTGATGGCTGTGGGCCTGGCCTCGGCATTGGCAGAC
TTCCAGGGCTCGGGGCCCGAAGAGATGACCTTCCGAGGTGGCGACCTCATCGAGATCCTTGGGGCGCAGGTGCCCAGCCTGCCCTGGTGCGTGGGCCGACACGCA
GCCTCGGGCCGGGTGGGGTTTGTGCGGAGCAGCCTCATCAGCATGCAGGGCCCCGTGTCCGAGTTGGAAAGTGCGATTTTTCTCAATGAGGAAGAAAAGTCATTC
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Evidence summary Top

Click the link of the category-specific score to view different category of evidences. The categories without any evidences are hidden by default.

Evidences	Syndromic Gene	GWAS	CNV	Linkage	Association	Expression	NGS de novo	NGS Mosaic	NGS Other	Low-Scale Gene Studies	Total
Score (No. of Studies)	No	0 (0)	1 (4)	0 (0)	0 (0)	1 (1)	0 (1)	0 (0)	0 (0)	0 (0)	3 (6)

Syndromic Autism Gene Top

Genome-Wide Association Studies(By Ethnic Group) Top

Reference	Stage	Platform	#Families	Affecteds	Result
#Subjects (% Women)	ADI-R	ADOS	Diagnosis	Age (range)	IQ (range)
No Evidence.

Reference	Stage	Platform	ASD Cases	Normal Controls	Result
#Subjects (% Women)	ADI-R	ADOS	Diagnosis	Age (range)	IQ	#Subjects (% Women)	Age (range)
No Evidence.

CNV Studies Top

Reference	Source	Method	ADI-R	ADOS	Diagnosis	Family				Individual
Reference	Source	Method	ADI-R	ADOS	Diagnosis	Total	Simplex	Multiplex	Control	Affected	Control	Total
Szatmari, 2007	Europe, North America	SNP microarray			ASD	1491	-	-	-	-	-	0
Gregory, 2009	USA	aCGH			ASD	-	-	-	-	119	54	173
Bucan, 2009	USA	SNP microarray			autism, ASD	912	-	912	-	-	1488	1488
Sanders, 2011	Simons Simplex Collection	SNP microarray	-	-	ASD	1127	1127	-	-	-	-	-

Linkage Studies Top

Reference	Source	Method	ADI-R	ADOS	Diagnosis	Family	Individual
Total	Simplex	Multiplex	Control	Affected	Control	Total
No Matched Linkage Regions !

Low Scale Association Studies (by Ethnic Group) Top

Reference	Source	Platform	#Families	Affecteds	Result
#Subjects (% Women)	ADI-R	ADOS	Diagnosis	Age (range)	IQ (range)
No Evidence.

Reference	Source	Platfrom	ASD Cases	Normal Controls	Result
ADI-R	ADOS	Diagnosis	Age (range)	IQ	#Subjects (% Women)	Age (range)
No Evidence.

Large Scale Expression Studies Top

Microarray Studies: 1

Reference	Source	Tissue	#Subjects (% Women)	ADI-R	ADOS	Endo- pheno	Diagnosis	Normal Controls (% Women)	Fold Change	Up/ Down	P/Q value
Gregg, 2008_2	mixed	lymphoblastoid cell lines	17 (11.76%)			autism with early onset	autism	12 (25.00%)	1.57	Up	0.0375
Platform: U133 Plus 2.0 GeneChip (Affymetrix,Santa Clara, CA, USA) ProbeSet: 219256_s_at RefSeq_ID/ EST: NM_018986 GEO_ID: GSE6575 Statistic Method: a stringent 1.5-fold unpaired t test with Benjamini

Proteomics Studies:0

Reference	Source	Tissue	Platform	#Subjects (% Women)	ADI-R	ADOS	Diagnosis	Normal Controls(% Women)
No Evidence.

NGS de novo Mutation Studies Top

Reference	Case Number	Family Number	de novo Number	Title
De Rubeis S, 2014	2270	-	1702	Synaptic, transcriptional and chromatin genes disrupted in autism

NGS Mosaic SNV Studies Top

Reference	Case Number	Family Number	Mosaic Number	Title
No matched NGS Mosaic SNVs!

NGS Other Studies Top

Reference	Source	Platform	ADI-R	ADOS	Diagnosis	Family			Affected	Validation Method
Reference	Source	Platform	ADI-R	ADOS	Diagnosis	Total	Simplex	Multiplex	Affected	Validation Method
No matched NGS Other Studies!

Low Scale Gene Studies Top

Reference	Organism	Tissue	ADI-R	ADOS	Diagnosis	Evidence Level	Result
No Evidence.

Contact Us if you are an author of a study regarding this gene and do not find your study in this table or find errors in the representation of your study details.

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

AutismKB 2.0

Evidence Details for SH3TC1

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics