AutismKB 2.0

Evidence Details for SLTM


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Basic Information Top
Gene Symbol:SLTM ( DKFZp762G052,FLJ10005,FLJ13213,Met )
Gene Full Name: SAFB-like, transcription modulator
Band: 15q22.1
Quick LinksEntrez ID:79811; OMIM: NA; Uniprot ID:SLTM_HUMAN; ENSEMBL ID: ENSG00000137776; HGNC ID: 20709
Relate to Another Database: SFARIGene; denovo-db
Sequences Top
>SLTM|79811|nucleotide
ATGGCTGCCGCTACCGGTGCGGTGGCAGCCTCGGCCGCCTCGGGTCAGGCGGAAGGTAAAAAGATCACCGATCTGCGGGTCATCGATCTGAAGTCCGAGCTGAAG
CGGCGGAACTTAGACATCACCGGAGTCAAGACCGTGCTCATCTCCCGACTCAAGCAGGCTATTGAAGAGGAAGGAGGCGATCCAGATAATATTGAATTAACTGTT
TCAACTGATACTCCAAACAAGAAACCAACTAAAGGCAAAGGTAAAAAACATGAAGCAGATGAGTTGAGTGGAGATGCTTCTGTGGAAGATGATGCTTTTATCAAG
GACTGTGAATTGGAGAATCAAGAGGCACATGAGCAAGATGGAAATGATGAACTAAAGGACTCTGAAGAATTTGGTGAAAATGAAGAAGAAAATGTGCATTCCAAG
GAGTTACTCTCTGCAGAAGAAAACAAGAGAGCTCATGAATTAATAGAGGCAGAAGGAATAGAAGATATAGAAAAAGAGGACATCGAAAGTCAGGAAATTGAAGCT
CAAGAAGGTGAAGATGATACCTTTCTAACAGCCCAAGATGGTGAGGAAGAAGAAAATGAGAAAGAAGGGAGCCTAGCTGAGGCTGATCACACAGCTCATGAAGAG
ATGGAAGCTCATACGACTGTGAAAGAAGCTGAGGATGACAACATCTCGGTCACAATCCAGGCTGAAGATGCCATCACTCTGGATTTTGATGGTGATGACCTCCTA
GAAACAGGTAAAAATGTGAAAATTACAGATTCTGAAGCAAGTAAGCCAAAAGATGGGCAGGACGCCATTGCACAGAGCCCGGAGAAGGAAAGCAAGGATTATGAG
ATGAATGCGAACCATAAAGATGGTAAGAAGGAAGACTGCGTGAAGGGTGACCCTGTCGAGAAGGAAGCCAGAGAAAGTTCTAAGAAAGCAGAATCTGGAGACAAA
GAAAAGGATACTTTGAAGAAAGGGCCCTCGTCTACTGGGGCCTCTGGTCAAGCAAAGAGCTCTTCAAAGGAATCTAAAGACAGCAAGACATCATCTAAAGATGAC
AAAGGAAGTACAAGTAGTACTAGTGGTAGCAGTGGAAGCTCAACTAAAAATATCTGGGTTAGTGGACTTTCATCTAATACCAAAGCTGCTGATTTGAAGAACCTC
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>SLTM|79811|protein
MAAATGAVAASAASGQAEGKKITDLRVIDLKSELKRRNLDITGVKTVLISRLKQAIEEEGGDPDNIELTVSTDTPNKKPTKGKGKKHEADELSGDASVEDDAFIK
DCELENQEAHEQDGNDELKDSEEFGENEEENVHSKELLSAEENKRAHELIEAEGIEDIEKEDIESQEIEAQEGEDDTFLTAQDGEEEENEKEGSLAEADHTAHEE
MEAHTTVKEAEDDNISVTIQAEDAITLDFDGDDLLETGKNVKITDSEASKPKDGQDAIAQSPEKESKDYEMNANHKDGKKEDCVKGDPVEKEARESSKKAESGDK
EKDTLKKGPSSTGASGQAKSSSKESKDSKTSSKDDKGSTSSTSGSSGSSTKNIWVSGLSSNTKAADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEV
SRCIAHLHRTELHGQLISVEKVKGDPSKKEMKKENDEKSSSRSSGDKKNTSDRSSKTQASVKKEEKRSSEKSEKKESKDTKKIEGKDEKNDNGASGQTSESIKKS
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Evidence summary Top

Click the link of the category-specific score to view different category of evidences. The categories without any evidences are hidden by default.
Evidences Syndromic Gene GWAS CNV Linkage Association Expression NGS de novo NGS Mosaic NGS Other Low-Scale Gene Studies Total
Score (No. of Studies) No 0 (2) 1 (4) 1 (1) 0 (0) 0 (0) 0 (0) 0 (0) 0 (0) 0 (0) 4 (7)
Syndromic Autism Gene Top
Genome-Wide Association Studies (By Ethnic Group) Top
Family Based Association Studies: 2
Reference Stage Platform #Families Affecteds Result
#Subjects
(% Women)
ADI-R ADOS Diagnosis Age
(range)
IQ
(range)
CAUCASIAN
Salyakina, 2010_1 Discovery Illumina HumanHap 550K BeadChip 124 -
(-)
AS -
(3-21)
-
>70
Salyakina, 2010_2 Replication Illumina HumanHap 550K BeadChip 110 -
(-)
AS -
(3-21)
-
>70
Case Control Based Association Studies: 0
Reference Stage Platform ASD Cases Normal Controls Result
#Subjects
(% Women)
ADI-R ADOS Diagnosis Age
(range)
IQ #Subjects
(% Women)
Age
(range)
No Evidence.
CNV Studies Top
Reference Source Method ADI-R ADOS Diagnosis Family Individual
Total Simplex Multiplex Control Affected Control Total
Smith, 2000 - FISHautism - - - - 1 - 1
Wassink, 2001 USA Chromosomal analysis of G-bandautism - - - - 278 - 278
Szatmari, 2007 Europe, North America SNP microarrayASD 1491 - - - - - 0
Christian, 2008 USA aCGHASD 397 35 362 - 397 372 769
Linkage Studies Top
Reference Source Method ADI-R ADOS Diagnosis Family Individual
Total Simplex Multiplex Control Affected Control Total
Allen-Brady, 2010 USA SNP-based genomic screenASD 40 - 40 - 192 461 653
Low Scale Association Studies (by Ethnic Group) Top
Large Scale Expression Studies Top
NGS de novo Mutation Studies Top
NGS Mosaic SNV Studies Top
NGS Other Studies Top
Low Scale Gene Studies Top

Contact Us if you are an author of a study regarding this gene and do not find your study in this table or find errors in the representation of your study details.

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018