AutismKB 2.0

View Variant Prediction


Notes:
*iFish(Wang M, Wei L, PIMD: 27527004) is a supporting vector machine (SVM) based classifier which uses gene and gene family specific attributes.
iFish utilized customized prediction cutoff for each classifier that maximizes the sum of sensitivity andspecificity.


Gene Symbol Chr Position refNT altNT transcript iFish Probability iFish Prediction SIFT Polyhen2_HDIV Polyhen2_HVAR
PPM1J 1 113254648 A G NM_005167 0.29 neutral 0.18 0.946 0.809
SLC16A1 1 113460234 A G NM_001166496 0.9995 deleterious 0 0.977 0.936
DENND2C 1 115153709 C T NM_198459 0.0642 neutral 0 0.531 0.263
CSDE1 1 115268874 A G NM_001242893 0.2936 neutral 0 0 0
VANGL1 1 116206697 G A NM_001172411 0.9313 deleterious 0 1 0.999
ATP1A1 1 116943617 G A NM_001160234 0.7546 deleterious 0 0 0
PTGFRN 1 117503940 G A NM_020440 0.0815 neutral 0.48 0.313 0.028
PTGFRN 1 117527332 C T NM_020440 0.7667 deleterious 0.31 0.027 0.007
TTF2 1 117632812 C A NM_003594 0.7743 deleterious 0.04 1 1
TTF2 1 117633170 G A NM_003594 0.948 deleterious 0.01 1 0.998
SPAG17 1 118566055 C T NM_206996 0.4037 neutral 0.15 1 0.997
CLCN6 1 11888605 G A NM_001256959 0.943 deleterious 0 0.999 0.974
MIIP 1 12082414 A C NM_021933 0.0514 neutral 0.63 0.965 0.647
TNFRSF8 1 12175658 G A NM_001281430 0.2987 neutral 0 0 0
SCNN1D 1 1225729 G A NM_001130413 0.0824 neutral 0 1 0.995
VPS13D 1 12336770 C T NM_015378 0.9913 deleterious 0 0.999 0.996
HNRNPCL1 1 12907860 C T NM_001013631 0.005 neutral 0.45 0 0
ATAD3B 1 1423250 C T NM_001317238 0.0078 neutral 0 0 0
ATAD3B 1 1425957 C T NM_001317238 0.0078 neutral 0 0 0
ITGA10 1 145534964 G A NM_001303041 0.0731 neutral 0 0 0

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Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018