AutismKB 2.0

View the Detailed Mosaic Information from PubMed ID: 28867142


Gene ID Gene Symbol Chr Position
166815TIGD2 4 90034383
Ref Alt Genotype Validated Method
G T Mosaic
SSC ID WES Depth WES Alt Count PASM Depth
11347.p1 213
PASM Maf PASM MAF 95%CI lowerbound PASM MAF 95%CI upperbound Location
exonic
iFish Probablity iFish Prediction SIFT Phylop
0.9711 deleterious 0.02 5.584
Polyphen2_HDIV Polyphen2_HVAR MutationAssessor GERP_RS
1 1 3.84 3.9
dScore CpG Hydropathicity Polarity
3.682 3.4 0.1

Notes:
*iFish(Wang M, Wei L, PIMD: 27527004) is a supporting vector machine (SVM) based classifier which uses gene and gene family specific attributes. At the same time, iFish alsoprovides functional annotations from other classifiers such as: SIFT, Polyphen2, and MutationTaster2.
iFish utilized customized prediction cutoff for each classifier that maximizes the sum of sensitivity andspecificity.

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018